AMCG00019168


Basic Information

Item Value
gene id AMCG00019168
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6769243 ~ 6770217 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019168
ATGTACCTGGGCTATGCCATCCACAAGATCGCCCGCACCTCGGAGGAGGAGCGCCGCAAGTTCCGCAAGTTCCGCAAGAAGCCGCACGCCATCAAGTGGAGGGCCACTCGCACGCTGGAGGAGgtgctggaggaagaggaggaggagcccaTGATCTACGAGGACACCCTGGAGGTGCGCGAGATCAAGCCTGAGCCCAAGGGTCCGACCAGGGAACAGCAGAAACATGATGGGCGGCGCAGGATCATGCAAGAGGGGCTGATGAAGATCTACGTGCTCCAGCTTCTGGCCCGAGCCGTGTTTGAGGTGGGCTTCCTCGCAGGGCAGTACCTCCTGTATGGTTTCAGGGTTAGTCCCTCGTACATCTGCGCCAAGAACCCTTGCCCTCATCAGGTCGACTGCTTTGTGTCCAGGCCCACAGAGAAGACCATCTTTCTTCTCATCATGTACGTTGTCAGCTGCCTCTGCCTGCTGTTGAACATATGCGAGATGTTCCACCTGGGCATCGGCACGATCCGAGACATCATCCGCAACCGGCGGAACAAGGGCAAGTGCCCATCCTACAGCTACCCCTACCCCCGCAACATCCCGGCCTCCCCCCCCGGATACAACCTGGTGGTCAAGTCGGAGAAGCCCAACAAGATCCCCAACAGCCTAATCACGCACGAGCAGAACCTCGCAAACGTAGCGCAGGAGCAGCAGTGCACGAGTCCTGATGAGAACATCCCCTCGGACCTGGCCAGCCTGCACCGGCACCTGCGGGTGGCACAAGAGCAGCTGGACATGGCCTTCCAGACCTACAACAGCAAGAGTAACCCCCAGCCCTCCCGGACCAGCAGCCCAGCCTCTGGGGGGACGGTGGTGGAACAGAACCGGGTCAACACGGCTCACGAAAAGCAAGGGGCCCGGCCCAAATCCAGCACTGAGAAACTAGGGTCCATTGTGAAAGACGGAAAGACATCTGTATGGATTTag

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07616 GJC1, GJA7, CX45; gap junction gamma-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019168 True 975 mRNA 0.59 1 6769243 6770217

Neighbor

gene id symbol gene type direction distance location
AMCG00019167 LOC106569335 coding upstream 63351 6704357 ~ 6705892 (+)
AMCG00019169 NA coding upstream 78159 6689915 ~ 6691084 (+)
AMCG00019163 NA coding upstream 101098 6606972 ~ 6668145 (+)
AMCG00019162 pth1r,LOC107671674,LOC106599896,LOC107660418 coding upstream 202750 6485078 ~ 6566493 (+)
AMCG00019160 crhr2,LOC102776588,LOC106599903 coding upstream 388898 6355260 ~ 6380345 (+)
AMCG00019171 NA coding downstream 53018 6823235 ~ 6832585 (+)
AMCG00019172 NA coding downstream 127601 6897818 ~ 6907983 (+)
AMCG00019173 cdk5,LOC106599847 coding downstream 137916 6908133 ~ 6917381 (+)
AMCG00019178 NA coding downstream 589386 7359603 ~ 7379672 (+)
AMCG00019180 NA coding downstream 613222 7383439 ~ 7394256 (+)
G31930 NA non-coding upstream 76963 6691722 ~ 6692280 (+)
G31915 NA non-coding upstream 90855 6678165 ~ 6678388 (+)
G31914 NA non-coding upstream 96066 6672898 ~ 6673177 (+)
G31894 myl13,myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749 non-coding upstream 332536 6434199 ~ 6436707 (+)
G31893 NA non-coding upstream 351394 6417481 ~ 6417849 (+)
G31947 NA non-coding downstream 49548 6819765 ~ 6820035 (+)
G31992 NA non-coding downstream 454415 7224632 ~ 7224997 (+)
G32010 agap3,LOC107383869 non-coding downstream 661463 7431680 ~ 7431944 (+)
G32048 NA non-coding downstream 850287 7620504 ~ 7620812 (+)
G32113 NA non-coding downstream 1401428 8171645 ~ 8171861 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 829646 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 2401040 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 3558353 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 3669072 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 4151191 2520104 ~ 2618052 (+)
G32005 NA other downstream 650284 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 1575238 8345455 ~ 8384592 (+)
G32286 NA other downstream 2491157 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 2559262 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 2599681 9369898 ~ 9628662 (+)

Expression


Co-expression Network