AMCG00019170


Basic Information

Item Value
gene id AMCG00019170
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6777404 ~ 6781144 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019170
AGACAAAATAAAGACGACACTTCCGCTTCCGCTTCCTCGACTGTAGCCCAACACGCAGAGGCTTCTGGGATACAAAATGGCTGCGATTGAGGGCTGTTCAGTGTCAAATTTTCACTGGGGGTTGAAAAACACGCTCCTGCTTTAAAAGTGTCCCGTTTTCCAAGACGCAGCCTCGCTAAGTCAGAGAAGGAGACATGTACAATTCACGGCTGGTTGGGGTCGTGGCAGCTGCCGCGCACAGGACTGTCTGCAGGTCCAGTTTGAGCTCCGCTGCGGGGGTCGCAGGGACAGCCGGGTTGTTTTGCACTCGCACGGACCCGGAGAGGCACGGCAGGCCGATGCACAGCTGCCCAGCCCCGGACACACAGTTCATGTGTTACAGCCTGACCCACAGGGCGCTGCTGAGGCTGCAGGGGGAGGACTCGGCAGCTTTTCTCCAGGGTCTGGTCACTAACGACATGGAGCTGCTGACCGGAGAGAGCCGGCGCGGCgcgatatacacacacatgctcagcGTGCAGGGCCGGACTCTGTTCGACCTGATCTTATACAGgttgAAGGAAAGTGAAGATGGACAGTTCAGTGTGCTGGTGGAATGTGACAGAACCGTAACGGACTCCCTTCAGAAACACCTGAAGGTCTATAAAATCCGACGCAAGGTGAGCATCTTGCCCTGTGCTGACCTTTCCCCATGGGCCGTTCTGCCCCTGGAAGGAGgtgagggcagagaggctgccGGCCCGAAACTGAGCGCTCCAGACAGGGTCCTGCTGTGGGAGGAAGACCCCCGAACTGTGGCGATGGGCTGGAGGCTGGTGGCACCCACACAACTGAACCCCGTGGAGCTGATATCAGAAAGCAGGCAAGGGGACATTGAGGACTATCACAGGCATCGGTACACCATCGGACTCCCCGAGGGCGTTCAGGACCTTCCCCCTGGGGTGGCCCTGCCTCTGGAATCCAACTTGGCCTACATGAGGGGGATCAGCTTCACCAAGGGCTGCTACATCGGCCAGGAGCTGACGGCCAGGACTCACCACACCGGTGTCATTCGCAAACGGCTAATGCCCGTGCGTCTGTCGGCGCCCATCCGGGATCCTGAGGGGCTGGCAATAGTCACCGAAGCGGGGAAGCTGGCTGGGAAGCACCGAGCTGGCTCGGGATCCCTTGGCCTGGCACTCATCCGCCTGGCCCACGCCAATGAACAGCTGGTCCTGCAGGCCCCCGGGGATGCCACACCGACGCTGCAGGCCTCCGTGCCCGAATGGTGGCCAAAGGATGGGAAACTCGAATGACTTCTGTAGGAAGAAGGAGCCAACAAAGCGCACAAGGATTTAGGATCTCGCTGGTTAATGTAGGAATTGTCTCGCACTGATCTGTACTTGCAGAAACtggataatatttttttaatgcatatatttatagtgTAGCAAACCAGATGGGGGGGTTTTGTAAAAGTCAACCTTAAAGTATTCAATTCTGTGGTGTTATACTGAGACGGCAGTCCGTGGCAGGCTGTGAACTTCAGTGCTAGTACAGTGTGTTTTCTTGCAGGTGATCCTCACTTGTATGTTCATTTCACAGTAAAGAAGTGTCCAAAAGGTGGCTACTGTAGTTTCCCTTTGAGATCAAATGGATGCTATTAAGTGTAACAGAGTATAAGTCTGAATATTGACTCTATAGGACTTCATCATTCcagctataaataaataaggaaacaatTCACTGTTTTACAGTCTTTTTTGTGTGCAGAATACAGGGAAACAATTGAtttattcctgtttatttatttgattcagTATTTATTGTACAGGCACTGTTAGCTATTCTAGAATGTGTTGCTCAGCAGGGGTTAGATTTCCTTTACTTTTAAACTAACATTATCTCTTGTGTTTGTATCATTGTCTAGAAATCAAATGATGAAGATAATATCGACTAAAGTTTTGAAGAGAGGCATTTATATGTGTTCAGATCATTCTGCAGATAACCCTCCCTCAAAGCTTACCATGTTGGTTGGTAGATGGTTTACAAAGTAACAATAGCATCATGGGTTccaaaaaataccttttcaacATAAATCTGTGAAATAATAGTAGCTTAAAGCAAAGTGTGTTTATGTAAAGCTGATGATTTAACAATCAACATTGAGGGACGTTTTACCTGAAATGACTActgatgataaaaataataataactagaagttgcagtCAACTTTAAAGGCTTCCAAGCTGTATCAGCATGTTTGTAGGTGGAAAGCTTCTATGGCTAAAGGTGTGCATTTCTCCGTTAATGGATTGTAGTTTAAAGTTTGAATGCCTGTGTTATTCTACTCCAGtcgtctccaaccctggtcctgtgGAGCCCCCATCCACTTTTATATATGTTATAGGttaccctaaat

Function

GO:

id name namespace
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process

KEGG:

id description
K22073 IBA57; transferase CAF17, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019170 True 2401 mRNA 0.49 3 6777404 6781144

Neighbor

gene id symbol gene type direction distance location
AMCG00019164 NA coding downstream 99076 6669953 ~ 6678328 (-)
AMCG00019166 tmie,LOC107660419,LOC106569331,LOC102776014 coding downstream 144560 6615650 ~ 6632844 (-)
AMCG00019161 myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541 coding downstream 325793 6434512 ~ 6451611 (-)
AMCG00019157 NA coding downstream 586193 6165183 ~ 6191211 (-)
AMCG00019158 NA coding downstream 615902 6157865 ~ 6161502 (-)
AMCG00019174 atg9b,LOC106599848,LOC107100460,LOC106569346 coding upstream 88370 6869514 ~ 6897553 (-)
AMCG00019175 asic3,LOC107383864,LOC106964295 coding upstream 162905 6944049 ~ 6963885 (-)
AMCG00019176 NA coding upstream 226640 7007784 ~ 7014100 (-)
AMCG00019177 asic1c,asic3,LOC106930524,LOC106599832,LOC106964295 coding upstream 397482 7178626 ~ 7179255 (-)
AMCG00019179 NA coding upstream 556703 7337847 ~ 7338238 (-)
G31933 NA non-coding downstream 85101 6689836 ~ 6692303 (-)
G31932 NA non-coding downstream 87888 6688860 ~ 6689516 (-)
G31931 NA non-coding downstream 89588 6687503 ~ 6687816 (-)
G31882 NA non-coding downstream 512268 6264691 ~ 6265136 (-)
G31878 NA non-coding downstream 514566 6262637 ~ 6262838 (-)
G31993 NA non-coding upstream 443445 7224589 ~ 7224997 (-)
G31997 NA non-coding upstream 509707 7290851 ~ 7291130 (-)
G32037 NA non-coding upstream 634941 7416085 ~ 7419853 (-)
G32057 NA non-coding upstream 892611 7673755 ~ 7687169 (-)
G32061 NA non-coding upstream 921698 7702842 ~ 7703076 (-)
AMCG00019165 NA other downstream 93103 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 1791020 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 1836737 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 2547413 4220443 ~ 4229991 (-)
G31130 NA other downstream 4598754 2177980 ~ 2178650 (-)
AMCG00019209 LOC106600477 other upstream 2066007 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 2470008 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 5070964 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 5632010 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 6387292 13168436 ~ 13188292 (-)

Expression


Co-expression Network