AMCG00019171


Basic Information

Item Value
gene id AMCG00019171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6823235 ~ 6832585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019171
CATATATATCACAGCAGTGGAAAGAAGACACTTTCTTTGCAAGACAGTTCCTGAATGGAGCCAATCCGATGACTATCAGAAAATGCAAGGAAGGACAGCAGAAGATCCCATTGTCAAAACTGCAAGCAATTGATGAGGACATTGAGGACAAAATCAAGaaagGCAGTATATACATTGTGGACTACGAGCTTTTGAATGGAGTTGAGGGGAATGTGATTGATGGTCAACAGCAGCACATTGCAGCCCCGATTGTTCTGCTGGAGAAGAAGGAGACAAGATTGGAGCCCATTGCCATACAGCTCCAACAAGTGCCTGGAGATGATAACCCAGTCTTCTCACCCAATGACGGCACTGACTGGCTTCTAGCCAAAATATGGGTTCGAAACTCTGACTTCTACATTCAAGTGTTTCCCACACACCTGCTCCATACCCACATGGTGGCCGAGGTGTTCTTCATTGCCACTGTCAGACATCTGGCTGATAACCACCCACTGTACAGGTTTATAGGAGTTGGGAAGGATGCTACATGGCCGTTCATacagaaagcttttgaaagaTTGACATTTGAATCTCTGTGTCTTCCGGATAACTTGAGAAATCGCAACGTGGAGGACATACCGGACTATTACTATAAGGAGGATGGGCTGGAAATTTGGAAAGCAATAGAGGAGTTTGTTACAAAAATTGTGAATGTTTACTACGATAATGACGACAGATGCCCAGACTCCCTGTTAACCAAGAAGGAGCTCATTAAGCTAACCACCATGATTATGTTCACCTCGTCCGCCCAGCATGCAGCGGTTAACAATGGACAGGTCCCACTTGGAACATATCCCAGAGAAGTGTACGGAGATGTGCACTTCACAGAAATAATCGACAGTTTCAATGCCAGCCTGCAGAAGATTGAGAAGAAGATTGATGCGCGCTCTGCATTAGGTCCACAATACCAGTACACATACATGAAGCCCAGCACAATAGAAAACAGCATTACACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019171 True 995 mRNA 0.45 7 6823235 6832585

Neighbor

gene id symbol gene type direction distance location
AMCG00019168 NA coding upstream 53018 6769243 ~ 6770217 (+)
AMCG00019167 LOC106569335 coding upstream 117343 6704357 ~ 6705892 (+)
AMCG00019169 NA coding upstream 132151 6689915 ~ 6691084 (+)
AMCG00019163 NA coding upstream 155090 6606972 ~ 6668145 (+)
AMCG00019162 pth1r,LOC107671674,LOC106599896,LOC107660418 coding upstream 256742 6485078 ~ 6566493 (+)
AMCG00019172 NA coding downstream 65233 6897818 ~ 6907983 (+)
AMCG00019173 cdk5,LOC106599847 coding downstream 75548 6908133 ~ 6917381 (+)
AMCG00019178 NA coding downstream 527018 7359603 ~ 7379672 (+)
AMCG00019180 NA coding downstream 550854 7383439 ~ 7394256 (+)
AMCG00019181 gbx1 coding downstream 567670 7400255 ~ 7403144 (+)
G31947 NA non-coding upstream 3200 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 130955 6691722 ~ 6692280 (+)
G31915 NA non-coding upstream 144847 6678165 ~ 6678388 (+)
G31914 NA non-coding upstream 150058 6672898 ~ 6673177 (+)
G31894 myl13,myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749 non-coding upstream 386528 6434199 ~ 6436707 (+)
G31992 NA non-coding downstream 392047 7224632 ~ 7224997 (+)
G32010 agap3,LOC107383869 non-coding downstream 599095 7431680 ~ 7431944 (+)
G32048 NA non-coding downstream 787919 7620504 ~ 7620812 (+)
G32113 NA non-coding downstream 1339060 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 2062654 8895239 ~ 8933746 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 883638 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 2455032 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 3612345 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 3723064 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 4205183 2520104 ~ 2618052 (+)
G32005 NA other downstream 587916 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 1512870 8345455 ~ 8384592 (+)
G32286 NA other downstream 2428789 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 2496894 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 2537313 9369898 ~ 9628662 (+)

Expression


Co-expression Network