AMCG00019172


Basic Information

Item Value
gene id AMCG00019172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6897818 ~ 6907983 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019172
CCCTAACATAAGTATCCTGGTAAATAACGTTATCAAAAAGACATTTATGGCTCTTGAAAAGGAATtgtgggtaaaaaaataaaataaagatggcTGCGTCCATATACTAATGGATGTTCGGACCGGTTTGCTTTCACTTAATTGAACTTGGATAAACAACAAgttcaatatgttttattttttaattaagagtaACTTCAGATTCATGGCATTCGGTCCTCTAGGGCCCCTCTATTCTCGCCTCACTAAAACAAGAGATTTGTGGAACTACAGCAGTAGGTTTGCCCAGAGCTGGACACAACTGCCCAATGCAGGGGTTTCGAAAGGATGCCCAAACAACTATTTCCTCCGCGTGTGGAGTCAGACCCAGAGGGCACTGAGACGGACGGCTCGGCAGAAACCTGAAGCTCCCAGTTTGAAACGGACACTGGGATTTATAGTGTGTCCAGCAGGCCTTGTCATTTCCGCCCGTCTGTACAACAGTGTGGCACACTGTCAGACTGACCTCAATAACAACAAACCACTGCAGTTTCAAGGGAGACATCACGACACAGAACCTGAGTTTGACTGGAAGGTTTTCTGGACATTTCTTAGGCCCCAGCTCTTGGCTCTGCTGGGAGCCGTTGTTCTTGCCTTCTGTGCTGCCATTCTGAATATTCAGATTCCTCTGATGCTGGGAGACCTGGTGAATGTGGTGGCCCGATACATGAGAGAAAATGCCGGGAACTATCTTAATGAAATGAGAGGCCCTGCGATAAAACTGCTGGGTCTCTATGGATTGCAGGGGCTGTTGACCTTCGGGTACATCACTCTGCTGTCCAGAGTTGGGGAGAGAGTTGCTGCAGACATGAGAAAGACTCTCTTTATGTCCATACTCCGGCAAGACATAGCCTTCTTTGATGCCAACAAGACTGGGCAGCTGGTCAATCGCTTGACCTCGGACATACAGGAGTTTAAGTCTTCGTTCAAGATGGTCATCTCTCAGGGACTGCGCAGCATCACTCAGACTGTGGGCTGCTTCGTGTCGCTGTACCTCATCTCTCCCAAACTTACGGGGGCCACCCTGGTGCTGATGCCCTGCCTGGTGGGGGCCGGAGCTCTGATCGGCTCGTTCCTGCGCAGGCTGTCCAGGAGGGCTCAGGAGCAGGTGGCCAAGGCTACGGGGGTGGCGGACGAGGCACTGGGGAACGTGCGGACGGTCCGAGCCTTTGCCATGGAGGACCGAGaggcagaGCACTACTCTGCCGAGGTTGACAAGTCATGTGACGTGAACGAAGCTCTCGGAGTGGGAATAGCCGTGTTCCAGGGGCTGTCAAACGTCGTCCTGAACTGCATTGTTCTGGGCACCATTTTCGCAGGCGGGTCCTTAATGGCCAGTGAGGAGATGTCCCCTGGTGATCTCATGTCTTTCCTGGTTGCCTCTCAGACGGTGCAGAGGTCCATGGCCAGCATCTCTATCCTCTTTGGACAGTTCGTGCGCGGTCTGAGTGCTGGAGCCAGAGTGTTCGAGTACCTGGTCCTGGAGCCCACCATTCCCCTGCAGGGGGGCGCCAGGATCCCCTACCATTCCCTGATTGGTAGAGTCGACTTTCGGGACATCACCTTCAGGcaagtcctgctctctcctccagTCTGGGTCATTGTGCAAGTTAATAGGGCATCCTATCCAACCCGACCTGGGAATGAGGTCCTGAAGAACTTCAACCTGGTCCTCCCCCCCTGCAAGACGGTGGCCATCGTAGGAGAGTCTGGAGGAGGTAAATCCACGGTGGCGGCTCTGCTGGAGCGCTTCTATGACCCCAGCAGGGGAGTGGTCACGCTGGATGGACAGGACATTCGAACCCTAGACCCGTCCTGGCTCCGAGGCCAGGTCATTGGATTCATCAACCAGGAGCCGGTTCTGTTTGGATCCTCAATCATGGAGAACATCCGCTTTGGTAAACCCGACGCCACTGATACAGAGGTTATCACTGCAGCCAAGCAAGCGAATGCTCACGGCTTCATCTCCGGCTTCCCTGAGGCCTACGACACCGTGGTCGGTGAGCGCGGGGTGACGCTGTCCGGGGGTCAGAAGCAGCGGATCGCTATTGCCCGAGCCCTGATCAAGAACCCCAGCATCCTGATCCTGGATGAGGCCACCAGCGCCCTGGACGCCGAGTCGGAGCGCGTGGTGCAGGATGCGCTGGACCGGGCCACCTCGGGCCGCACCGTGCTCATCATCGCCCACCGGCTCAGCACTGTGCAGGGTGCTGACATCATCTGCGTCCTGAGCAACGGCAAGGTCATGGAGCcctgtgatgatgatgatgatgatgatgacagaTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05655 ABCB8; ATP-binding cassette, subfamily B (MDR/TAP), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019172 True 2326 mRNA 0.54 16 6897818 6907983

Neighbor

gene id symbol gene type direction distance location
AMCG00019171 NA coding upstream 65233 6823235 ~ 6832585 (+)
AMCG00019168 NA coding upstream 127601 6769243 ~ 6770217 (+)
AMCG00019167 LOC106569335 coding upstream 191926 6704357 ~ 6705892 (+)
AMCG00019169 NA coding upstream 206734 6689915 ~ 6691084 (+)
AMCG00019163 NA coding upstream 229673 6606972 ~ 6668145 (+)
AMCG00019173 cdk5,LOC106599847 coding downstream 150 6908133 ~ 6917381 (+)
AMCG00019178 NA coding downstream 451620 7359603 ~ 7379672 (+)
AMCG00019180 NA coding downstream 475456 7383439 ~ 7394256 (+)
AMCG00019181 gbx1 coding downstream 492272 7400255 ~ 7403144 (+)
AMCG00019187 tmub1,LOC105023792,LOC102788489 coding downstream 788870 7696853 ~ 7701770 (+)
G31947 NA non-coding upstream 77783 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 205538 6691722 ~ 6692280 (+)
G31915 NA non-coding upstream 219430 6678165 ~ 6678388 (+)
G31914 NA non-coding upstream 224641 6672898 ~ 6673177 (+)
G31894 myl13,myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749 non-coding upstream 461111 6434199 ~ 6436707 (+)
G31992 NA non-coding downstream 316649 7224632 ~ 7224997 (+)
G32010 agap3,LOC107383869 non-coding downstream 523697 7431680 ~ 7431944 (+)
G32048 NA non-coding downstream 712521 7620504 ~ 7620812 (+)
G32113 NA non-coding downstream 1263662 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 1987256 8895239 ~ 8933746 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 958221 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 2529615 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 3686928 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 3797647 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 4279766 2520104 ~ 2618052 (+)
G32005 NA other downstream 512518 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 1437472 8345455 ~ 8384592 (+)
G32286 NA other downstream 2353391 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 2421496 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 2461915 9369898 ~ 9628662 (+)

Expression


Co-expression Network