AMCG00019180


Basic Information

Item Value
gene id AMCG00019180
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7383439 ~ 7394256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019180
ATGACGTCGTGCAGCAGCAGCTTTGCATTCACCTCCATGGCCCTGCGCTCCCTGCGCCTGGAGGAGGACCTGCTTGAGAGACAGAGGTTCAGGAAGAGGCTCGTGGCCCCACAGGCCAACCGGTACCTCCTGCAGAAGGAGGCCAGGCAGCAGGGGAAGGGCCAGAAGACGGGCTCCTCCACGGAGCCGCCGCCGGTGTGCCAGGACCTGGTGGTGCAGAACGCCATCTTCTCCGGGGATCTGGAGACCATCAGAGAGCTGTTTCCCAAGGGGACCTCCGTCAACTTCATCATCGAGTCGCGAGGGGAGGACCTGCGCTGGATCAGCAAGGAGATGGGTAAGGTGACAGCGTTTAAACAGACAGTCGATGACATGAGCTGTTTGGACATCATCGTGGTCTCGAGGGCCGGGCGCCAGGCTCTGGTGTTCTGGCACGCCCTGGTGATGGGCGACACTGACACCGTGTGCGCTCTCCTCGACGACCCGCAGTGTCCAGCTCTCATGCCCGGCACCATCTTTGACATCAGCGACACCGAGGGCTGGATGAGTGTCCGCTACAACCTCCGCAGGCTCAacatttttgtttatgtttgtgggAGTGTCCACCGTCTTCCCTACAAACGACAAATAGACATATATCATCAGAACCATTCAGCTGGGCCAATGGGGCcgaagaaaaagaaaacgctGCGCACCGATGTCATCGCCACAGCTAAAGCCACGGGCCCTGAGCTGCAGTACTGGAATGCCCTACTGGTGGGCGATGAACCCACCATCGTCAGCATCATCGACGATCCCGAGTCGGGGCACATACAGTCGGCCATCTTCGACACCAGCAACATTGAGGAGTGGAAGAACTACAGGTTCAATTACAGGGGGCTGCGGCTGTGGTCTCTGACCTACGAGCAGGAGCTGACGACCCCCATCCACATCACCGCCGCCCGGGGGTACACCGACTGCCTCAAGCACCTCCTGATGAGGGGCTCCGACGTGGACATGGCGCCGGGAGGGAAAACAGCCCTCCACGAGGCCTGTGAGAACGCCACCACTGAGTGTGCCAGGCTGCTGCTGGCCTTCGGAGCCAGCGCCAACGCCGTGACCGAGGACGGCTTGATGCCCCTCCACTTGTGCACCACCCCCGAGTCCCTCCAGTGTGCCAAGCTCCTGCTTCAGTTCGGGGCCACGGTCAACGGTCGCAGCCTCGAGGAGGACGACACTCCACTACATGTGGCGGCGCGCTACGGCCTCCCCGGCCACATGGACCTGTATCTGCGCTACGGGGCGGCCATCGAGCGGCAGAATGACGAGGGCCAGACGCCGCTCAACTGCGCCTGTTCGCAGCCGCAGAGCGTCAACGAGCTGGAGCGGTACTACCAGGTGTGCCAGCTGCTGGTCGGCGCTGGGGCCAACATCCACGCCTGCGACCAGGACCGCCAGTCCCCACTGCACATGGCCTGCAAGAACGCCAACCCAGAGGCggtggagctgctgctgcagaggggCGCCAGCGTGAACAGCATGAGCTACAGTGGCGATGCGCCCATGCACAACATCCTCAAGGGCGTGGCTTACAAGCTGGAGCACCAGCCCGAGCGCATCGTCCGCTCCCTCCTCAACCACGGCTCCATCCGCGTCTGGCCCGGCGCGCTGCCCAAGGTGCTCAAGTACTGCTGCACCTCCCCGAGGACGATCGAAGCCCTGCTGAACGCCTATGACCGCCTCAAGATCACCGACTCCTGGGTGGAGGCTGTCCCTCTGGACGTCTTTGAGAAACACAGCTCCTTCTATGAGTCTCTGTTCTCCCTGATGCACTCGCCGCGCTCCCTGCAGCACCTGGTGCGCTGCCGGCTCCGGACCCTGCTGGAGGGGCGGCTGCACCTGGTGGTCTCCCAGCTGGGCCTCCCCACCTTCGTGCAGAACTATCTGCTGCTGGCATTCACGGACGCCCTGCACTGACCCGGGGGAACCCATCAGAGCTCCCGATCACCGGCACCCCCAGGTACAGAGGCCCGGTTAGGTTCCTCGAGACCATGTACGCTCTGTGAGGGACCTACTTTCCGACCTACCTTCTCATGGTGTCCAAGAAGCCTCCTGATGGCCTCGAGAAGCTACATCCAGTGTGTTGGGTGTCTGACGCAGCTGCTGTGACTGGCTATTGAGATCATAATCATGATCATAAGAGTATGGACAGCTTTGTATTCTGTTTAAGAGCTGAGCTTTATGGAAAAAAGCGAATAAATGATGTGAAGTTGGGAGTTCTCTGGCACGGGCGTCCACTGTTCAGTCTTTACAGTTGCAGTGATGCCTCCAGTCCAAACCCTTTCCACAGTGATGCTGCTTCTATTGCTGTCCGTCCTGGAAACTGGAAAGCAGCctcctgtctctgtcctctCGCTTGTCTCTGTCCTTTTGGCTGTTTCTGTCctcttgtctgtctctgtcctcttGTCTTTCTCTGTCCCCCATCTTGTCTCTGTCCTCTTGCCTGTCTCTGTCCCCTGGCTTGTCTCTTTCCTCTTGCCTGTCTCTGTCCCCCAGCTTGTCTCTGTCCTCTGGTGTAAGAGGAGCTGTGGTCGTTCAGGATAAACTGCAAGGTCTATAATCTCTCGGGAAGGAAGAGACATTGctgttttgtaaatgctttcCAAAGATAGTCATACAAATCAAAAAAGactattctgtttgtttgttttcattttgtagttCTTTCAtcctgtatttaaatgtactcATCTCTTGCCTTGTTTACAGTTAACACAGACCATTTAAATCGCACCTGAcaggtaatttaattattttagctgTGGTTTTCTGGGGGAAAGATTTACCTCAGATTCTGTCTGGAACGTTTTGAGGATTCGAGGAATGAATTGGATTAATTAAACAGGtattagtgtgtttttttttatatatttgctcCCGTGTTGTAATCATGTAACTGTATTTGATATAAGAAAATGTCGATGGTGTTACTATATCAAAAATAGTGCCATACATTTGGATGGCCAGCTCACATTATATCGTGGGAAGCCTAGATGTGTCAATCAAGTCACAGCGAGAAGACCTAAGGAATAGTTAGAGCAATCAACGCAACAGTACTGGCTAATTATAACACATCATCTGATAATGAGTAGCAATTACAGGAATTCTACAATAGATGTGTTAAAATCATCTACAACAGAGAACttaaatataatctttcatcaataaataaataaataaataaataacaaaaggtAAATAACAAGCCCAGAATCACTTTTTATTCCACAGATAAATCTATCTCTGCTAAAATACACcagaaaacattaatacaacACAAAGTAAAAGCTCACTTGTGTTGCACTGCAATGCACTGAAGGGGTCTGAGACAAAGGTGAAGTTTACAAGAAAAACTTTtctgaatgaattaaattaGAGCTTTTGCAAGGCACAGATGGCACAGGAAATCgtgtaacattttgtgtttgtatttagttttttcagggTTATGTCGGAAACGCATATCCAAATTAAACTGTATTGCGTGCTTTGTTATTTCCTGTAGTCTCCGTTTTTGTACATGTATGTAATGCCATTATGCCTGTAATTAACgcatatacaaaaaataaaactggaaaaacggATTTTAAAAGCGATTTTTGTTGTATGAAATATAGCTATACTTTACCTTTAAACACGTAATTGTAGAATGGCAATACTTGCATGCACgatcaaatgaaatgtaatgattaGTATGATAATTATACAGAAGTTTGGTTTTGGATATTTGGATCAGATTGCACATAACTTTTGCTAATGAAAATCATGCGCTCCTTCCACTCATTCCATCCAGTGCTGTGTGTTACAGCTGTGTTTCATGTGGGCTGTTTGAATGGGTGAAGCACTTTGTGTTTCATTGTCCATGGTTGGTCTTCTTCGTGTTTGAACAGTAGGCCGATATGTCCTTGTCCACACACGCACAGTCACAATtcattattggtattatttgtgtgtgactTTAACCTCCCATACGCAGACTGAGCGCTGCGGCACGTTGAAGTAGATGTACAGCTGATATTGTTTTTTAGATGCGGCTACGGGGCATGACGCAGGTTCAATTGGTTAGTGTTAACTTGAGTTTGCAATAAAGTCTGATAAAATGAtactcaaatgttttttccagaGTCGTTTTATTAATAAAGCAGTCTGTTGGATGtgaataaacaaactatatacgT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10332 ASB10; ankyrin repeat and SOCS box protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019180 True 4220 mRNA 0.50 7 7383439 7394256

Neighbor

gene id symbol gene type direction distance location
AMCG00019178 NA coding upstream 3767 7359603 ~ 7379672 (+)
AMCG00019173 cdk5,LOC106599847 coding upstream 466058 6908133 ~ 6917381 (+)
AMCG00019172 NA coding upstream 475456 6897818 ~ 6907983 (+)
AMCG00019171 NA coding upstream 550854 6823235 ~ 6832585 (+)
AMCG00019168 NA coding upstream 613222 6769243 ~ 6770217 (+)
AMCG00019181 gbx1 coding downstream 5999 7400255 ~ 7403144 (+)
AMCG00019187 tmub1,LOC105023792,LOC102788489 coding downstream 302597 7696853 ~ 7701770 (+)
AMCG00019190 NA coding downstream 317399 7711655 ~ 7712858 (+)
AMCG00019189 NA coding downstream 327584 7721840 ~ 7723326 (+)
AMCG00019188 cul2 coding downstream 344268 7738524 ~ 7760540 (+)
G31992 NA non-coding upstream 158442 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 563404 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 691159 6691722 ~ 6692280 (+)
G31915 NA non-coding upstream 705051 6678165 ~ 6678388 (+)
G31914 NA non-coding upstream 710262 6672898 ~ 6673177 (+)
G32010 agap3,LOC107383869 non-coding downstream 37424 7431680 ~ 7431944 (+)
G32048 NA non-coding downstream 226248 7620504 ~ 7620812 (+)
G32113 NA non-coding downstream 777389 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 1500983 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 1769387 9163643 ~ 9222509 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 1443842 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3015236 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 4172549 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 4283268 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 4765387 2520104 ~ 2618052 (+)
G32005 NA other downstream 26245 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 951199 8345455 ~ 8384592 (+)
G32286 NA other downstream 1867118 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1935223 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1975642 9369898 ~ 9628662 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023054 asb10 coding NC_007135.7 CM002908.2 34085940 ~ 34107618 (+)