AMCG00019187 (tmub1,LOC105023792,LOC102788489)


Basic Information

Item Value
gene id AMCG00019187
gene name tmub1,LOC105023792,LOC102788489
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7696853 ~ 7701770 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019187
ATGGCTCTGATCGAGGGCGTGGGGGACGAGGTGACCCTGCTCTTTGCGGTGGTGTtcctggtgctggtgctggtgctggcaTGGGCCTCCACTCACACTGCGGACCGCTCCGAGCAGCTCTTCACCTCCAGCCCCGCCTCCCCTGCCACCGCCCCGCATCGGGCCGGGCCCCAGAGCACGCTGGGAGCGACCGCCCCGTCAGAGACAGACCCCCAGGAGACCGCCCCGGCCGCCGGTGGCCGGGGCGAGGAGGGCAAGGACTCCTCCAGCTcggtgggggaggaggagagcacGGAGGGGGCTGCCCACGAGGGCGGGGAGTTTGGAGGAGACGGTCTGCGCCACAGAGAGACTGCAGGCGGTGTGCAGAGTGTCCCTGACCCCAGGCCCCCAGATTCCCCCGAGCCCAGCGCTTCAAGTGCCAACAGTCAGCCCCCCCAGGATGACTCCCCCGATGAGAGGAACATGGTCCTCCGCCTCAAGTTCTTAAATGACACTGAAAGAGTGGCTCAAGTGAAGCCTGAGGACACCATTGGCTACATTAAAAGGACGTATTTCGCCGGGCAGGAGCACCAGGTGCGGTTGATATACCAGGGACAGCTTTTACGAGACGACGCTCAGACCCTGGCTTCCCTGAACCTGCCGGACCACTGCGTCCTGCACTGCCACATCTCGCAGCACGCCACGCCCCAGGTCCCTGCGGGGGCGCGGGCGGCCGACCAGGTCCACGTGGCGCTCAACGTGGGCAGTCTGATGGTGCCCCTGTTCGTGCTCATGCTGTCGGTGCTGTGGTACTTCCAGATCCAGTACCGGCAGTTCTTCACCGCCCCCGCCACTGCCTCCCTCGTGGGCATCACCATCTTCTTCAGCTTTGTGGCGTTCGGCGTCTATCGTCGGTAG

Function

symbol description
tmub1 Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human TMUB1 (transmembrane and ubiquitin like domain containing 1).

NR:

description
PREDICTED: transmembrane and ubiquitin-like domain-containing protein 1

GO: NA

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019187 True 900 mRNA 0.66 2 7696853 7701770

Neighbor

gene id symbol gene type direction distance location
AMCG00019181 gbx1 coding upstream 293709 7400255 ~ 7403144 (+)
AMCG00019180 NA coding upstream 302597 7383439 ~ 7394256 (+)
AMCG00019178 NA coding upstream 317181 7359603 ~ 7379672 (+)
AMCG00019173 cdk5,LOC106599847 coding upstream 779472 6908133 ~ 6917381 (+)
AMCG00019172 NA coding upstream 788870 6897818 ~ 6907983 (+)
AMCG00019190 NA coding downstream 9885 7711655 ~ 7712858 (+)
AMCG00019189 NA coding downstream 20070 7721840 ~ 7723326 (+)
AMCG00019188 cul2 coding downstream 36754 7738524 ~ 7760540 (+)
AMCG00019191 NA coding downstream 247728 7949498 ~ 7964176 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding downstream 281427 7983197 ~ 7983668 (+)
G32048 NA non-coding upstream 76041 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 264909 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 471856 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 876818 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 1004573 6691722 ~ 6692280 (+)
G32113 NA non-coding downstream 469875 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 1193469 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 1461873 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 1606867 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 1648079 9349849 ~ 9352655 (+)
G32005 NA other upstream 275770 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 1757256 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3328650 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 4485963 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 4596682 3094452 ~ 3100171 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 643685 8345455 ~ 8384592 (+)
G32286 NA other downstream 1559604 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1627709 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1668128 9369898 ~ 9628662 (+)
G32539 NA other downstream 2702869 10404639 ~ 10409497 (+)

Expression


Co-expression Network