AMCG00019188 (cul2)


Basic Information

Item Value
gene id AMCG00019188
gene name cul2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7738524 ~ 7760540 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019188
GGGCAGCGACTGACAGACTTCGAGTGCTTGGCCGTTCTCGGGCGCGGTGGCTACAGCAAGCTTTCACTTATAAGCTATACAATGTCCTTGAAACCACGGGTGGTGGATTTTGACGAAACATGGAACAAACTCCTGACCACAATCAAGGCAGTCGTGATGCTGGATTATGTGGAGAGGGCCACATGGAATGACCGCTTCTCAGATATTTATGCTTTGTGTGTTGCATACCCAGAACCTTTGGGTGAAAGGTtatacacagaaacaaaaatatttctgGAAAACCATGTTCGACACCTATATAAGAAAGTCCTGGAGTCAGAGGAGAAGGTCTTGGTGATGTACCACAGATACTGGGAGGAGTACAGTAAGGGAGCTGACTACATGGACTGCTTATACAGGTACCTCAACACACAGTTTATTAAGAAGAACAAACTGACCGAAGCCGATCTGCAGTATGGTTACGGTGGGGTTGACATGAACGAACCACTTATGGAAATAGGAGAGTTGGCACTAGACATGTGGAGGAAGCTGATGATTGAACCCCTACAGACCGTTCTGATCAGGATGCTGCTGAAAGAAATCAAAAAtgacCGGTGTGGTGAGGACCCTAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTTAAGTTTTATCAGGAAATCTTTGAAGGGCCATTTCTGTCAAAAACGGGAGAATATTACAAACAGGAAGCCTCCAATTTACTGCAGGAGTCAAACTGCTCACAATATATGGAAAAGGTTTTAGCGAGATTAAAAGACGAAGAAGTGCGATGTCGGAAGTACCTGCACCCCAGCTCCTACGCCAAAGTGATCCACGAATGCCAGCAGAGGATGGTAGCCGACCACCTGCAGTTCTTACACGGGGAATGTCAGAATATCATCCGCCAGGAGAAGAGAGATGACATGGCCAACATGTACACACTGCTGCGTGCCGTCTCCAATGGTTTACCTCACATGATTCAGGAGCTGCAGATCCACATCCATGATGAGGGCCTTCGAGCAACTAGTAACCTCTCTCAGGAAAACATGCCAACTCAATTTGTGGAGTCCGTGTTAGAGGTTCATAGTAAATTCGTTCAGCTCATCAACACCGTCCTGAATGGCGACCAGCACTTTATGAGCGCACTTGATAAGgcaTTGACTACAGTTGTCAACTACAAAGAGCAAAAATCCATCTGCAAGGCTCCTGAATTGCTTGCTAAGTACTGTGACAATCTGCTGAAGAAATCTGCAAAGGGAATGACAGAGAACGAGGTGGAAGACAAGCTCACAAGTTTCATCACTGTATTTAAGTATATTGATGATAAGGACGTCTTTCAGAAGttttatgCAAGAATGCTAGCAAAGAGATTAATACATGGCCTGTCCTTGTCCATGGATTCAGAAGAAGCCATGATCAACAAACTGAAGcAAGCATGTGGCTACGAGTTCACTAGCAAACTCCATCGAATGTACACCGACATGAGTGTCAGCGCTGACCTGAACAACAAGTTTAACAACTTCATTAAAACCCAGGAAACTGTGATAGATCTGGGAATTAGTTTTCAAATTTATGTACTACAGGCGGGCGCTTGGCCTCTGACACACGTCCCCTCCTCCACGTTCGCCATCCCTCAGGAGCTGGAGAAGAGTGTGCAGATGtttgaattattttacaatcAGCACTTCAGTGGGAGGAAGTTAACCTGGCTGCACTATCTCTGCACAGGTGAAGTGAAAATGAACTATCTCTCCAAGCCCTACGTGGCAATGGTCACCACATACCAGATGGCAGTGCTTCTGGCCTTCAATAACGGCGAGACGGTCAGTTACAAAGAGCTCCAGGACAGCACACAGATGAACGAGAAGGAGCTCATGAAAACAATCAAGTCGCTGCTGGATGTCAAAATGATAAACCACGACTCTGAAAAGgAAGAGATCGAAGCAGAATCTACATTCTCACTAAATATGACCTTCACCAGTAAAAGAACAAAGTTCAAAATCACAACGTCGATGCAGAAGGACACGCCACAGGAAATGGAACAGACCAGGAGCGCAGTGGATGAGgacaggaaaatgtatttacaagcTGCTATAGTACGAATCATGAAGGCCCGCAAAATACTGAGACACAATGCGCTAATACAGGAGGTCATTAACCAGTCGAAAGCCAGATTTAACCCCAGCATCAGCATGATCAAGAAGTGCATCGAGGTCCTGATCGACAAACAGTATATCGAACGAAGCCAGAGCTCAGCAGATGAGTACAGCTATGTAGCATGATATTGAGTCCTGTAGGCTTTCTGGAGGACGGAGACCGTTTATGTTGCTGTCACTGTCTCGTGTGTTCCTGTGGGATGAAGCAGAACTGTGACTCCTTCTAGGGAAACTTCACTGAGTCGCCAGACAGCCCCCAACTCCCTTGATTTTATGCTGTTTACAACATCACCAGTGCCACGCCGAGTGCGTCAATGAAAATGCCTATAGTTATTGAGCGCAAGctgatattacatttttagtctactaaacaagaaaaaacaaagtgaGTGAGCTATGACTTTACTGAAATGTGGGAGATTTAGATGGAAACCATGCTTTCTTTTCTCACGTTTgcagttgttgtgttttttttaatgtatcaaaGTAAGAAAagaataatattgtaataaaactGGTATACTGATCATTGTatctactttaaaatgtaaaaaaaagcaaaaacaaaataaaaaacaaaaacacaatacaggaAGAAACCTTCGAGGTGACAAACATGGTCCTGCTGcttgtcaaataaaaaaaaacaaaaaaaaaacaggcata

Function

symbol description
cul2 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within chordate embryonic development and vasculature development. Predicted to be part of Cul2-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human CUL2 (cullin 2).

NR:

description
cullin-2

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03870 CUL2; cullin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019188 True 2859 mRNA 0.44 21 7738524 7760540

Neighbor

gene id symbol gene type direction distance location
AMCG00019189 NA coding upstream 15198 7721840 ~ 7723326 (+)
AMCG00019190 NA coding upstream 25666 7711655 ~ 7712858 (+)
AMCG00019187 tmub1,LOC105023792,LOC102788489 coding upstream 36754 7696853 ~ 7701770 (+)
AMCG00019181 gbx1 coding upstream 335380 7400255 ~ 7403144 (+)
AMCG00019180 NA coding upstream 344268 7383439 ~ 7394256 (+)
AMCG00019191 NA coding downstream 188958 7949498 ~ 7964176 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding downstream 222657 7983197 ~ 7983668 (+)
AMCG00019193 LOC106568841 coding downstream 253992 8014532 ~ 8028727 (+)
AMCG00019194 nrp1 coding downstream 528534 8289074 ~ 8298766 (+)
AMCG00019197 NA coding downstream 548453 8308993 ~ 8322828 (+)
G32048 NA non-coding upstream 117712 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 306580 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 513527 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 918489 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 1046244 6691722 ~ 6692280 (+)
G32113 NA non-coding downstream 411105 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 1134699 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 1403103 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 1548097 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 1589309 9349849 ~ 9352655 (+)
G32005 NA other upstream 317441 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 1798927 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3370321 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 4527634 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 4638353 3094452 ~ 3100171 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 584915 8345455 ~ 8384592 (+)
G32286 NA other downstream 1500834 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1568939 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1609358 9369898 ~ 9628662 (+)
G32539 NA other downstream 2644099 10404639 ~ 10409497 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000070_03794060_03815688 CUL2.L, CUL2 coding CI01000070 null 3793037 ~ 3815713 (+)