AMCG00019191


Basic Information

Item Value
gene id AMCG00019191
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7949498 ~ 7964176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019191
ATGCTCATTTTGCCTCATTCATCATTGTCTCACAGTGACATGGTAAAGCTGGTAGAAGTCTCCAATGATGGTGGCCCTTTGGGAATCCATGTAGTGCCTTTCAGTGCCCGAGACCGAAGGACCCTGGGGTTATTAGTAAAGCGGCTGGAGAAAGGCGGCAAAGCTGAGCAGGAGAATCTGTTTCATGAGAACGATTGTATCATACGGATTAATAATGGAGATCTTCGCAACATCAGATTTGAACAAGCGCAACATATGTTCCGGCAAGCCATGCGTTCACCTGTCATTTTATTCCACGTGGTCCCAGCCACAAAGAAAGTACAGTACGAACAGCTCTCTCAAAGTGAGAAAAACCCCGCTTATATCCCCGGCCGGTTCAGCCCGGACTCCCAGGGCAGCGAGCGGGGGAGCCTTGTGGTGGGACTGGACCACACCCCCCAGAGGATGATGAGGCCGGGGGCTCACGTGGAGCAAGGAGAGTTTTATTCACCGCTACCTCACAACACCGGCTCCACTGGGAAACCCCCCTCTGGCCTGACCCCGTCCCCTCAGAGAGTGCTCAGCCCCACGCCCTCCAGCGGTTACACCAAAAAGGTTGGGAGGAGGCTCAACATCCAGCTGAAGAAAGgctTGGAAGGTCTAGGTTTCAGTATCACATCGCGTGATGTTCCGATTGGTGGAACGGCACCTATTTATGTGAAAAACATCCTTCCCCGAGGGGCTGCAATTCAAGATGGCCGCCTTAAGGCTGGAGACAGGCTTCTGGAGGTGAATGGAGTGGACCTGAATGGAAAAACACAGGAGGAGGCTGTTGCTTTGCTCAGGGGCACACAGATGGGGGGGTCCGTGGGTCTCGTGGTCCTCCGGCAAGAAGATGCTTTTCTTCCCCGGGAAGTGGTGAGTCCCAGCCCTCAGTGCTCTCATCTCCACTGGTGTGTGACTTGA

Function

GO: NA

KEGG:

id description
K04237 PARD3; partitioning defective protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019191 True 945 mRNA 0.54 5 7949498 7964176

Neighbor

gene id symbol gene type direction distance location
AMCG00019188 cul2 coding upstream 188958 7738524 ~ 7760540 (+)
AMCG00019189 NA coding upstream 226172 7721840 ~ 7723326 (+)
AMCG00019190 NA coding upstream 236640 7711655 ~ 7712858 (+)
AMCG00019187 tmub1,LOC105023792,LOC102788489 coding upstream 247728 7696853 ~ 7701770 (+)
AMCG00019181 gbx1 coding upstream 546354 7400255 ~ 7403144 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding downstream 19021 7983197 ~ 7983668 (+)
AMCG00019193 LOC106568841 coding downstream 50356 8014532 ~ 8028727 (+)
AMCG00019194 nrp1 coding downstream 324898 8289074 ~ 8298766 (+)
AMCG00019197 NA coding downstream 344817 8308993 ~ 8322828 (+)
AMCG00019198 itgb1a,LOC107655695,LOC107653806,LOC107713907 coding downstream 373045 8337221 ~ 8346452 (+)
G32048 NA non-coding upstream 328686 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 517554 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 724501 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 1129463 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 1257218 6691722 ~ 6692280 (+)
G32113 NA non-coding downstream 207469 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 931063 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 1199467 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 1344461 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 1385673 9349849 ~ 9352655 (+)
G32005 NA other upstream 528415 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 2009901 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3581295 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 4738608 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 4849327 3094452 ~ 3100171 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 381279 8345455 ~ 8384592 (+)
G32286 NA other downstream 1297198 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1365303 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1405722 9369898 ~ 9628662 (+)
G32539 NA other downstream 2440463 10404639 ~ 10409497 (+)

Expression


Co-expression Network