AMCG00019193 (LOC106568841)


Basic Information

Item Value
gene id AMCG00019193
gene name LOC106568841
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8014532 ~ 8028727 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019193
CTCTCTGAGCCCTGATGCTGACCCCGACAACACCTTCCAGAGAGAGGGATTTGGACGTCAGAGCATGTCGGAGAAACGGACCAAGCAATTTGGAGATGCCAGTCAGCTGGAGTTCATTAAAACACGGAAATCAAAAAGCATGGATTTAGTAGCTGACGAGATTAACCTCAGTCCTCGGTCAGAGAAGAACACAGGTTCCCCAACTAGAGATGTTGGCCCTTCGTTAGGCCTGAAAAAGTCGAGCTCGCTGGAAAGCCTGCAGACTGCGGTGGCCGAGGTGACGCTGAATGGAGACATCCCTTTCCACCGGCCACGCCCGCGCATCATCAGGGGCCGGGGCTGCAACGAGAGCTTCCGCGCGGCCATCGATAAATCCTATGACAAGCCCGCTGCTGAGGAGGACGACGAGGGCATGGAGACTTTGGAAGAGGACACGGAGGAGAGCTCTCGGTCAGGCAGGGAGTCCGTATCCACCGCCAGCGACCTAGCCTTACTGAGCGGCGGCTCGGGAACCATCGAGAGGCAGGTCAACGGCGGCCGAGCCaaagaggagaagaagaaagacaagGGTGGAAAGGACAAGAAGAAGCAAGAGCGTGataaagagaaggagaagaataAAGCCAAGAAAGGGATGCTGAAGGGACTTGGGGACATGTTT

Function

NR:

description
PREDICTED: partitioning defective 3 homolog isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019193 True 661 mRNA 0.55 4 8014532 8028727

Neighbor

gene id symbol gene type direction distance location
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding upstream 30864 7983197 ~ 7983668 (+)
AMCG00019191 NA coding upstream 50356 7949498 ~ 7964176 (+)
AMCG00019188 cul2 coding upstream 253992 7738524 ~ 7760540 (+)
AMCG00019189 NA coding upstream 291206 7721840 ~ 7723326 (+)
AMCG00019190 NA coding upstream 301674 7711655 ~ 7712858 (+)
AMCG00019194 nrp1 coding downstream 260347 8289074 ~ 8298766 (+)
AMCG00019197 NA coding downstream 280266 8308993 ~ 8322828 (+)
AMCG00019198 itgb1a,LOC107655695,LOC107653806,LOC107713907 coding downstream 308494 8337221 ~ 8346452 (+)
AMCG00019199 LOC107565694,LOC107566918 coding downstream 345073 8373800 ~ 8401893 (+)
AMCG00019196 NA coding downstream 394419 8423146 ~ 8423334 (+)
G32048 NA non-coding upstream 393720 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 582588 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 789535 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 1194497 6819765 ~ 6820035 (+)
G31930 NA non-coding upstream 1322252 6691722 ~ 6692280 (+)
G32113 NA non-coding downstream 142918 8171645 ~ 8171861 (+)
G32235 NA non-coding downstream 866512 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 1134916 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 1279910 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 1321122 9349849 ~ 9352655 (+)
G32005 NA other upstream 593449 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 2074935 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3646329 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 4803642 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 4914361 3094452 ~ 3100171 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 316728 8345455 ~ 8384592 (+)
G32286 NA other downstream 1232647 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1300752 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1341171 9369898 ~ 9628662 (+)
G32539 NA other downstream 2375912 10404639 ~ 10409497 (+)

Expression


Co-expression Network