AMCG00019194 (nrp1)


Basic Information

Item Value
gene id AMCG00019194
gene name nrp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8289074 ~ 8298766 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019194
TATGACTACGTGGAAGTGCGGGATGGGGGCGATGAAAACGCCCAGCTGGTTGGGAAGCACTGTGGGAAGATCGCGCCGTCTCCGGTGGTGTCTACTGGCAATCAGCTCTACATTAAGTTCGTGTCGGATTACGAAACGCATGGAGCTGGATTCTCCATCCGTTATGAAGTCTTCAAAACAGGACCGGAGTGCTCCAGGAACTTCACAGCAACAAGCGGAATTATCAAATCTCCACAATTCCCGGACAAGTACCCCAACAACCTGGAATGCACTTACATGATCTTTGCCCCCAAAATGGCAGAGATTATAATCGAGTTTGAGAACTTCGAGCTGGAGCCTGACACCACCCCTCCCACAGGGGTGTTTTGCCACTACGATCGCCTAGAAATCTGGGATGGGTTTCCTGGAGtGGGTCCACATATAGGACGATACTGTGGACAGAACACCCCTGGGCGCATCCAAGCCTATACTGGTATCCTGTCCATGACCCTGAATACTGACAACGCAATAGCTAAAGAGGGATTCTCAGCCAACTTCACCGTCATTGAGAAAACTGTACCAGAAGATTTCGACTGCATGGAGCCACTGGGAATGGAATCGGAAGAGATCCCTTCAGACCACATTATTTCGTCTTCCCAGTATAACACAAACTGGTCACCAGAGAGATCCCGACTCAATTACATCGAAAACGGTTGGACTCCATCAGAAGACTCCAGCAAAGAGTGGATA

Function

symbol description
nrp1 Enables GTPase activator activity and vascular endothelial growth factor binding activity. Involved in several processes, including cell surface receptor signaling pathway; cellular response to hepatocyte growth factor stimulus; and positive regulation of cellular component organization. Located in cytosol; focal adhesion; and plasma membrane. Implicated in lung non-small cell carcinoma. Biomarker of hepatocellular carcinoma.

NR:

description
PREDICTED: neuropilin-1 isoform X2

GO:

id name namespace
GO:0035767 endothelial cell chemotaxis biological_process
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007508 larval heart development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0048538 thymus development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0001570 vasculogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007155 cell adhesion biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019194 True 729 mRNA 0.50 4 8289074 8298766

Neighbor

gene id symbol gene type direction distance location
AMCG00019193 LOC106568841 coding upstream 260347 8014532 ~ 8028727 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding upstream 305406 7983197 ~ 7983668 (+)
AMCG00019191 NA coding upstream 324898 7949498 ~ 7964176 (+)
AMCG00019188 cul2 coding upstream 528534 7738524 ~ 7760540 (+)
AMCG00019189 NA coding upstream 565748 7721840 ~ 7723326 (+)
AMCG00019197 NA coding downstream 10227 8308993 ~ 8322828 (+)
AMCG00019198 itgb1a,LOC107655695,LOC107653806,LOC107713907 coding downstream 38455 8337221 ~ 8346452 (+)
AMCG00019199 LOC107565694,LOC107566918 coding downstream 75034 8373800 ~ 8401893 (+)
AMCG00019196 NA coding downstream 124380 8423146 ~ 8423334 (+)
AMCG00019195 NA coding downstream 149114 8447880 ~ 8461935 (+)
G32113 NA non-coding upstream 117213 8171645 ~ 8171861 (+)
G32048 NA non-coding upstream 668262 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 857130 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 1064077 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 1469039 6819765 ~ 6820035 (+)
G32235 NA non-coding downstream 596473 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 864877 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 1009871 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 1051083 9349849 ~ 9352655 (+)
G32321 LOC103376870 non-coding downstream 1394503 9693269 ~ 9750270 (+)
G32005 NA other upstream 867991 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 2349477 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3920871 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 5078184 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 5188903 3094452 ~ 3100171 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 46689 8345455 ~ 8384592 (+)
G32286 NA other downstream 962608 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1030713 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1071132 9369898 ~ 9628662 (+)
G32539 NA other downstream 2105873 10404639 ~ 10409497 (+)

Expression


Co-expression Network