AMCG00019197


Basic Information

Item Value
gene id AMCG00019197
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8308993 ~ 8322828 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019197
GTGGACCTTGGTTTCCTCCGTTTTGTTTCTGCCATTGGAACACAAGGCGTCGTCTCCAAGGAAACCAAAAAGATGTACTACGTGAAAGCTTACAAAGTGGATGTGAGCTCCAATGGGGAAGATTGGATCACATTAAAAGAAGGCTCCAAGCAAAAGACTTTCCAAGGGAACACAAACCCGACAGACGTCGCCATGACGCAGCTGCCCAAACCAACACTGACTAGGTTTCTCCGCATTAGGCCCGTGTTATGGCAGAACGGGATCGCCATGCGGTTCGAAGTGTACGGCTGTAAAATCTCAGAATACCCTTGCTCTGGGTTTCTGGGAATGGTGTCGGGCCTTATCACCGACGGCCAGATCACAGCCTCCACCTACCTCGACCGGAGCTGGGTGCCGGAGAACGCCCGTCTGATGACCAGTCGCTCGGCCTGGGCCCTACTGGCGCAGGGGCAACCCTACACCAACAAGTGGCTGCAGGTGGACCTGGGAGAGGAGAAGCTCATACGTGGCCTCATCATCCAAGGAGGCAAACACCGGGACAACAAGGTCTTCATGAGGAAGTTCAAGATCAGCTACAGCAACAACGGCTCGGACTGGAAGTTCATCATGGACACCAGTGGAAACAAGGCGAAGAGTTTTGAAGGCAATATGAACTATGACACCCCCGAGCTCCGGACATTCGAGCCCCTTCTCACGCGGATGATTCGGGTCTACCCTGAGCGTGCAGCGGCCGCTGGCCTGGGGCTGAGACTGGAGCTGCTGGGCTGTGAGATTGAACCACCCACGTCTGctcccaccaccccccccaccacggCGAGTCTCCCCGAGGACTGCGATGATGAAACAGCGAGCTGTCACAGCGGCACAGGTGATGACTACGAAGAGACAGATTTCCTGTGGTTTAGCTGTGACTTTGGCTGGGCTGACGAACCCTCGTTCTGTGCTTGGACTTCGGAGAAGGATACCAATGCCAGGTGGAAAATACAATCCGCAGGAACTCCAACTCTTAATACTGAACCAAACCAGGATCACACAGGAGAAGGAGGTAACTTCATCTACCTGCTGGACGACAGTGCTTCTGAGAACGAGGTGACCCGGCTGCTGAGCCCGGTGGTAACGTCCCAGGACTCGGACCTCTGCATGTCCTTCTGGTACCACATGTTCGGCTCTCACATTGGCATCCTGCGCATCAGGCAGAGGAAGGAGACGGCAGAGGGCCAGGCTGACGTTCTCCTGTGGACAGTCAGTGGGCATCAGGGGAATCGCTGGAGAGAGGGACGCGTCATCATCCCACACTCTGACAAAGCCTATCGGGTGGTAATTGAAGGTGTTGTAGAGAAGAAAAGATCGGGACACATTGCAGTGGATGATGTAAAGATACTGGATGACCTAGACATGGCAGACTGCAAGGaagaaaGCGATACTGTGTATCCTGTATATCCAGACCATGAGGAAAATGAAGAGAATACTGGGAATATGCTGAAAACCTTGGACCCTATTCTTATTACCATCATTGCCATGAGTGCCCTTGGGGTCTTTCTGGGAGCCATCTGCGGTGTCGTCCTGTACTGTGCCTGTTCCCACAGCGGACTCTCAGAGCAGAACTTATCTGCTCTGGAGAACTACAATTTTGAACTCGTAGATGGAGTCAAACTAAAGAAAGACAAACTCAACTCACAGAATTCCTATTCAGAAGCATGA

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process
GO:0048919 posterior lateral line neuromast development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019197 True 1701 mRNA 0.53 9 8308993 8322828

Neighbor

gene id symbol gene type direction distance location
AMCG00019194 nrp1 coding upstream 10227 8289074 ~ 8298766 (+)
AMCG00019193 LOC106568841 coding upstream 280266 8014532 ~ 8028727 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding upstream 325325 7983197 ~ 7983668 (+)
AMCG00019191 NA coding upstream 344817 7949498 ~ 7964176 (+)
AMCG00019188 cul2 coding upstream 548453 7738524 ~ 7760540 (+)
AMCG00019198 itgb1a,LOC107655695,LOC107653806,LOC107713907 coding downstream 14393 8337221 ~ 8346452 (+)
AMCG00019199 LOC107565694,LOC107566918 coding downstream 50972 8373800 ~ 8401893 (+)
AMCG00019196 NA coding downstream 100318 8423146 ~ 8423334 (+)
AMCG00019195 NA coding downstream 125052 8447880 ~ 8461935 (+)
AMCG00019201 LOC101470268,LOC102291500,LOC102212547,LOC103361717 coding downstream 175047 8497875 ~ 8521854 (+)
G32113 NA non-coding upstream 137132 8171645 ~ 8171861 (+)
G32048 NA non-coding upstream 688181 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 877049 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 1083996 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 1488958 6819765 ~ 6820035 (+)
G32235 NA non-coding downstream 572411 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 840815 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 985809 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 1027021 9349849 ~ 9352655 (+)
G32321 LOC103376870 non-coding downstream 1370441 9693269 ~ 9750270 (+)
G32005 NA other upstream 887910 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 2369396 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3940790 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 5098103 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 5208822 3094452 ~ 3100171 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 22627 8345455 ~ 8384592 (+)
G32286 NA other downstream 938546 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 1006651 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 1047070 9369898 ~ 9628662 (+)
G32539 NA other downstream 2081811 10404639 ~ 10409497 (+)

Expression


Co-expression Network