AMCG00019199 (LOC107565694,LOC107566918)


Basic Information

Item Value
gene id AMCG00019199
gene name LOC107565694,LOC107566918
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8373800 ~ 8401893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019199
GGAAATGAATGTATAAAAGCAAACGCAAAGTCTTGTGGGGAGTGTATTCAAGTTGGAGAAAAATGTGGATGGTGCACCAAACCTGACTTCTTAAAACAAGGCGAGCCGACCTCTGCCAGATTCCCTGAAGAAGCGCTGTCCGCACGACTTAATCGAGAACCCCCGGGGCAGCCAGACGGTGCTCGTCAACAAGCCAgtGAAGCACAGTCATTTAATCTAACTTTCAAAAGAGCTGAAGACTATCCTATTGATCTGTATTACCTTATGGACCTTTCCTACTCCATGAAGGATGACTTGGAAAACGTCAAAAATCTGGGAACAATGCTGATGCATGAAATGTCAAAAATCACCAGCGATTTTAGAATTGgTTTTGGCTCCTTTGTGGAGAAGACTGTGATGCCCTATATTAGCACAACTCCAGCCAAGCTGTTGAACCCTTGCACTGGTGACCAGAATTGCACTAGCCCTTTCAGCTATAAAAATGTGCTCCGATTGACCAGTGATGGAAACCAGTTCAACACTCTTGTAGGGCAGCAGCAGATTTCTGGAAACTTGGATTCTCCTGAAGGAGGGTTTGATGCCATTATGCAAGTTGCTGTCTGTGGAGAGCACATTGGCTGGAGGAATGTCACCCGCCTGTTGGTGTTTTCCACTGACGCTGGCTTCCACTTCGCTGGAGATGGAAAACTGGGTGGAATAGTTTTGCCAAATGATGGGAAATGCCACTTGAAAGATGGGATGTACACAATGAGCCAttactatgacTATCCCTCAATTGCACATCTAGTGCAGAAACTGAGTGACAACAACATTCAAACGATCTTCGCCGTCACTGAAGAATTCCAGTCTGTTTACAAGGAACTGAAGAACCTCATTCCAAAATCTGCTGTAGGAACCCTTTCTGCCAACTCCAGCAACGTGATAAATCTGATTATTGATGCTTATAAGtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATAAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGTGCCCTGCAGGGCCGGATATCATCCCAATTGTTGCCGGAGTGGTGGCAGGCATTGTGCTCATAGGCCTGGCCCTGCTGCTCATCTGGAAATTGCTGATGATCATCCACGACCGGAGAGAGTTTGCCAAGTTCGAGAAGGAGAAGATGAATGCCAAGTGGGACACGAACTTCACAGGAGCCGGGCTGCTGGTGTCCGGGCGCTGTGACAGTGTGCCGGGCCTTGTGCAGAAGGGCTGCCCAGAGGCCCAGATTGAAAACCCCAGGGGCTCCACTGTGGTGCAGCAGAATGACAATGTCACAGCTCGCCGCCGAGGGGAGGAGGCGAAGCCACGCAAAATCACACAGCTACAGCCCCAGAAACTGCTCTTAAACCTGCGTATAGGGGAACCCCAGACCTTTGAGGTGAAGTTCAAAAGAGTGGAGGATTATCCTATTGACCTGTACTACCTTATGGACCTCTCCTACTCCATGGAAGATGATTTGGTTAATATTAAAAGGCTGGGCACTGATCTGATGAGTGAAATGAGGAACATCACAGATGACTTTAGGATTGACATGCTGGAGAATCCGTGCAAGAGGAAAGAGGCCTGTGCGAGGCCCTTCAGCTTTCAAAACGTCCTCAGCCTGACGGAGAACGGAAGTCTTTTCAATGAGCTGGTGGGGAGGCAGCGTATTTCAGGAAACCTGGACTCCCCTGAGGGAGGCTTCGATGCTTTGATGCAGGCAGCAGTGTGTGAGGAGGACATTGGCTGGAGGAATGTCACCCGCCTGTTGGTGTTCTCCACCGACGCTGGCTTCCACTTCGCTGGAGACGGAAAACTGGGTGGAATAGTTTTGCCCAATGATGGAAAGTGTCAcctgaaaaacaacatgtacaCGATGGGTCCATATCGGGACTATCCGTCTGTCGGTCATCTCGCCCAGAAGTTAAGTGAGAGTAACATTCAGACCATCTTTGCCGTAACCCAGGATGTTCTGCCTGTATATGAGAGCTTGCAGTACCTCTTACCAAAGTCTGCAGTCGGGATTCTCTCAAACAACTCCCATAACGTACTGCAGCTGATCATTGATGCCTATAGTGCCCTCACATCAGAAATCCTCATGGAGAACAGCAGATTACCTGAGGGTTTCCAGATCAGTTACACCACACTCTGCAAAGACAACAGGAGCCGGTCTGGGGAAGAGGGCCGGAAATGCGCCAACATTTCATTCGGCGACGAGGTGACATTTACCATAAGCATTGTTGCACACAAGTGTCCGAGAGGTACCGATGACTTCCGAGTCGCATTCAAAGCTCAGGGTTTCAGTGAGGAGGTGGAAGTTGTCCTGAAGCCAATCTGTCAGTGCGAGTGTCACAAGGACAGAGTTCCACACAGCCCCAAGTGTAATAATGGCAGTGGGGCCTATGAATGTGGGATCTGCAGGTGCAACGCCGGTCATGTTGGTAGCTTCTGTGAGTGCGACACCGATGAAGCCAACGCCATCCATATGCTGGACTCCTGCAGGAAGGACAACGGCTCAGAGACCTGCAGCTCGAACGGGGAGTGTGTGTGCGGCCGCTGTGTGTGCCACAAGAGCAGGAGAAATCCCAGCCACCTCTACTATGGCAAATACTGTGAATGTGATAACTTCAGATGTGACCAGCATCAGGGCTTGATCTGTGGAGGCCAAGGGCAGTGCGATTGCGGCGTGTGTAAGTGCTTCCCAGGGTTTGCTGGAGACGCCTGCGATTGCCCTCTGAGCACcgccacgtgccaggccaggacAGGCCAGCTGTGCAACGGCAGGGGGAACTGCACCTGTGGGGTGTGCGTCTGCAGCGACAGTCGATTCCAGGGGCCCACCTGTGAGATATGCCCCACGTGCTCAGATGTGTGTGCTGTACACAGGGATTGTGTTCTGTGCAGGGTCTTCAACGGGGGCTTGAGGCAGGAGGACTGTGAGAGGCAATGCAGTCACTTGAACATCACCCTGGTACAGGAGAGTGCCAACCTGCCACGAGCACACCACAGCGGTGGCCTACAGAAGTGCAGGGAGAAGGACGAGGACAGCTGCTGGGTCCACTTTGTGTATCAAGATGAGCACACAATCCAACACCCGCAGGTTCATGTCGCTAAAAAACGAGAGTGTCCCTCGGGCCCAGATGTCCTGCTCATCATCGGGGTGCTGAGCGGCTCCATCGTGCTCGTTGGAGTGGCCCTGCTCATCATCTGGAAACTGGTCACTACCATCCATGACAAGAGAGAGTTTGCCAAGTTCCAGAAAGAGATCGTAGACACCAAGTGGGATATGGAGGATTCAGATATCAGCAGTATTTGCTTCTCCTCCCTCTGTTTTGCTGACAGGGTCATTTTTAAGATCAGCGTGGAAAATGTTGCAAGCGGTGTGCAGGTCGATCTTACGGTAACGGATGTGTTTGCAGATGTTGAAGTTAATTGGTGGCACACAGAAGCCACACTGTCCGTACTGACAATCTCTGGTCTGCCCGCCTGCGGCCGCCTCCCCCCTCCTGATGAGAAGAGAGTAGAAGCAAGCAGGGATGTAGGAGACAAGAGCAAGTGCCAGGACTGTGAAAAGACACCATCAGGCGAACAGGCTGTGTCACATCAGTGGTGTCTTTGTGAAGAGCAGCAGttagagaggggagaggagctCTTCAGAGCAGAGACAGCAGCTGAAAAtacacagagaggaggaggcACTCCTGCAACACACGATGACAGTCAATACATGAACAGAGATAAAGGGCAACAA

Function

NR:

description
PREDICTED: integrin beta-1-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016020 membrane cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019199 True 3906 mRNA 0.51 24 8373800 8401893

Neighbor

gene id symbol gene type direction distance location
AMCG00019198 itgb1a,LOC107655695,LOC107653806,LOC107713907 coding upstream 27348 8337221 ~ 8346452 (+)
AMCG00019197 NA coding upstream 50972 8308993 ~ 8322828 (+)
AMCG00019194 nrp1 coding upstream 75034 8289074 ~ 8298766 (+)
AMCG00019193 LOC106568841 coding upstream 345073 8014532 ~ 8028727 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding upstream 390132 7983197 ~ 7983668 (+)
AMCG00019196 NA coding downstream 21253 8423146 ~ 8423334 (+)
AMCG00019195 NA coding downstream 45987 8447880 ~ 8461935 (+)
AMCG00019201 LOC101470268,LOC102291500,LOC102212547,LOC103361717 coding downstream 95982 8497875 ~ 8521854 (+)
AMCG00019200 NA coding downstream 138720 8540613 ~ 8541305 (+)
AMCG00019202 arhgap12,LOC102789345 coding downstream 176032 8577925 ~ 8606120 (+)
G32113 NA non-coding upstream 201939 8171645 ~ 8171861 (+)
G32048 NA non-coding upstream 752988 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 941856 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 1148803 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 1553765 6819765 ~ 6820035 (+)
G32235 NA non-coding downstream 493346 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 761750 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 906744 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 947956 9349849 ~ 9352655 (+)
G32321 LOC103376870 non-coding downstream 1291376 9693269 ~ 9750270 (+)
G32005 NA other upstream 952717 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 2434203 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 4005597 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 5162910 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 5273629 3094452 ~ 3100171 (+)
G32286 NA other downstream 859481 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 927586 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 968005 9369898 ~ 9628662 (+)
G32539 NA other downstream 2002746 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 6037360 14439253 ~ 14486706 (+)

Expression


Co-expression Network