AMCG00019203


Basic Information

Item Value
gene id AMCG00019203
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8636550 ~ 8662947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019203
ATGGAAGttacaaattacaacaACGTGGTGGAGGCGAACTCCGATTCGGACGATGAAGATAAGCTGCATATAGTGGAGGAGGAGAGTCTGACAGACGCCGCAGACTGTGACAACAATGTGCCAGAGGACGACCTGCCAACCGACCCCGCAaaacaaaaggaaaagacaCCCTGGGGCCTGAAGCTCAGCCACAGGAAGCCGGATATAAAGTCTGTCAGTGGGGAGTGGCAGGCGGGTTGTGTGGCCGCACTCTGTGTGCTCTGGGACCCAGGAGGTCGGAGGTCGGCTCCAGTGAAGGACGAATGTGGTTCAGAAGCCGAAGATGAGCAGAACACTGACCCGATCGTGGAGGAGATCCTGCAGCAAGGTGACACGGCGGTCATCTACCCGGAGGCGCCGGAGGAGGAGCAGCGGCAGGGCACGCCCGAGGCTAGCGGGCACGACGAGAATGGGACGCCAGACGCTTTCTCTCAGCTTCTAGCATGCCCGTACTGTGACAGAGGATACAAACGCTACACGTCTTTGAAGGAACACATCAAATATCGACACGAGAAGAACGAGGACAACTTTAgctgctctctctgcagttACACGTTTGCCTACCGAACACAGCTAGAGCGTCACATGACGGCACACAAATCTGGCCGAGATCAGCGTCATGTCACACAGTCTGGGGGCAATCGGAAATTCAAATGCACTGAGTGTGGAAAAGCGTTTAAATACAAGCACCATCTAAAAGAGCACTTGCGTATCCATAGTGGAGTCAAGACTTCCCAGTGTCCGTCTCCTTCCCTGTCTTCGTCGCCCAGCACCCCTGCCAGAACACAACTCCGGGAGAAGGCTGACAACAGCAAACCGCTACAAGAGCAGCTTCCCGtcaaccaaatcaaaactgaaccTGTGGATTATGAGTACAAGCCCATCGTGGTGACCCCTGGAATCAACTGTGCTACCACTTTGCAGAACGGGGTGTTCAATGGGGGAGCCACGTTGCAAGCGACGGCGGCTTCATCTCAGGGCGTGGTGCAAGCTGTGGTTTTGCCAACGGTGGGCCTGGTCTCCCCTTTCAGCATCAACCTAAGTGACATTCAGAATGTTCTCAAAGTAGCCGTGGACGGAAACGTTATTCGCCAAGTACTGGAGAACGCTCACATCAATGCCTCATCCAAAGAACAAGGAACAATTGGCTCAGTGCAGCAGGGAGGTCATTCCCTGATTTCTGCTATCAGTCTTCCCCTCGTCGACCAGGACGGAACGACCAAAATTATCATCAACTACAGCTTGGAGCAGCCCAGCCAAGTTCAAGTCCTGCCTCAAAGCTTGAAGAAGGAGAGCCCGAGTACTGCCGAGGTCTGCAAAACTGAGAAACTCCCTGAAGACCTCActgtcaaaacagaaaaaagcaaatgtcCCGAGACTGAAAAGAGGGTGAGCACTTGTCTTCTCTGTGACGACTGCCCGGGGGGGTTAAATGCACTTCAAGAGCTCAAACACTGTCATTTGAAAAAAGAAGGTGGGAGTCTGCAGGTAAATGGAACCGATCCAGAGAAATCAGATTCGACCATTTCGTCCAACCCACTGGATGGGACTCTATCTCCTGGTCAGCCACCCCTAAAGAACCTCTTGTCACTCCTCAAGGCATACTATGCCTTAAACGCAGAACCCACCAAGGAAGAGCTCTCCAAGATTTCCGATTCTGTCAGCCTGCCCCTAGACGTCGTCAAGAAGTGGTTTGAGAAGATGCAGACGGGGCAGATCTCACTGGGAGCTCCCGGTACCTCTTCTGAACAAGACACGCTCCCACCAGAATGTGATCCAAATGAGACCGCTGTCCCTTCCGTCGGAGCAGTGCAGGACAGTACGTCAACCGCGGAAAAGCCACTTACCCTGACCGACTCCCAGGTTATCTCCGTACAGCCCTCGAGCGTGACCGTTAATGGGTCTGGAAGCAACACACCTCCCCCGTCACCACTAAATCTGTCCTCGTCCAGGCCTGTCGTTGTGAAAACGGAGGACGGCGCCGAGGACGAGGCACAGGCAGAGCCCCTAGACCTCTCACTACCAAAGCAAGCCAGAGAAGACATGGACAGAGCCGCCGGTACCAGTGTTTACCAGAACAGTGTTTACTCCGTTCAGGAAGAACCCTTGAACTTAACTTGCACAAAGAAGGAACAGCTGCAAAGTGACACTATTAATGCAAGCCCAACTCCTGTTTATGTTACCCCACCAAGTGCCAATCCTATTAACATTGCTATTCCCACAGTCACCACTCAGTTACCTACGATTGTTGCCATTACCGACCAGAGTAGTGTTCCTTGTTTACGGGCCCTGACAACCAACAAACAGACTATTTTGATCCCCCAGGTTGCATACACCTACACCACTTCAAGCAGCAGCCCAGCAGGATCTGAAACCCCACAGAAAAccatacaaataaatggaaacCAGGAGGAAAGGCAAGACACTAGCTCCGAGGGCGTCTCCACTGTGGAAGACCAGAATGACTCCGACTCCACTCCTCCGCGGAAGAAGAtgaggaaaacagaaaatggaaTGTACGCCTGTGACTTGTGTGATAAAATATTCCAGAAGAGCAGCTCCCTGTTGAGACACAAGTATGAGCACACAGGTATGTGGAAAGGCCCGGAGCCCGAGGAGGGGGACGGGGAGGCCGGGGCCGGGGCCCGGGAGGAGAGCCCCCCGGCGGAGCAGCAGTCCGACAGCAGGGCCACCTCCCCGCCCTCACAGCTGGACTCCGACGACCGGGAGAGCAGGGAAGACGAGGagagcgaggaggaggaggacgaagAGGAGGCGGCCATGGTGACCATTGTGAAGGAAGAGTACGAGGAGGTGCCGgcggggggagaggggggacgGGAAGACGGAGTCgcggaagaggaggaggaggaggaagaggaggcgaTGGAGACGGAAGAGCTGCAGATCAAGAAGGAAGTGATGGAGGAGGCGGAGGAAAGCAGCGGCGTGGTTttgaaagaggagagagaaacaccTGATGACtgtgacagaaaatga

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09299 ZEB1; zinc finger homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019203 True 3039 mRNA 0.54 10 8636550 8662947

Neighbor

gene id symbol gene type direction distance location
AMCG00019204 NA coding downstream 2 8627014 ~ 8636548 (-)
AMCG00019186 NA coding downstream 1029175 7599869 ~ 7607375 (-)
AMCG00019184 agap3,LOC107383869,LOC102197517 coding downstream 1137007 7480093 ~ 7499543 (-)
AMCG00019185 NA coding downstream 1166287 7445886 ~ 7470263 (-)
AMCG00019182 agap3 coding downstream 1202912 7431674 ~ 7433638 (-)
AMCG00019207 NA coding upstream 305939 8968886 ~ 8984696 (-)
AMCG00019208 NA coding upstream 370844 9033791 ~ 9044972 (-)
AMCG00019210 bambi,LOC106578551,LOC106590018 coding upstream 546393 9209340 ~ 9214704 (-)
AMCG00019211 wac coding upstream 560343 9223290 ~ 9250326 (-)
AMCG00019216 NA coding upstream 832435 9495382 ~ 9549803 (-)
G32144 NA non-coding downstream 261146 8338036 ~ 8375404 (-)
G32096 NA non-coding downstream 664325 7971193 ~ 7972225 (-)
G32076 cul2 non-coding downstream 878323 7755253 ~ 7758227 (-)
G32061 NA non-coding downstream 933474 7702842 ~ 7703076 (-)
G32057 NA non-coding downstream 949381 7673755 ~ 7687169 (-)
G32351 NA non-coding upstream 686902 9349849 ~ 9352652 (-)
G32586 NA non-coding upstream 2305182 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 2305570 10968517 ~ 10968773 (-)
G32635 NA non-coding upstream 2455761 11118708 ~ 11119507 (-)
G32693 NA non-coding upstream 2933869 11596816 ~ 11600671 (-)
AMCG00019165 NA other downstream 1952249 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 3650166 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 3695883 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 4406559 4220443 ~ 4229991 (-)
G31130 NA other downstream 6457900 2177980 ~ 2178650 (-)
AMCG00019209 LOC106600477 other upstream 184204 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 588205 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 3189161 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 3750207 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 4505489 13168436 ~ 13188292 (-)

Expression


Co-expression Network