AMCG00019213


Basic Information

Item Value
gene id AMCG00019213
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9251152 ~ 9434114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019213
ATGGTACAGAATAAGAAACTGAAGGAAGTCAGAGCGTGTCTTGAAGCTAACAGAGATCCTGTTGCAAAAATTCTTGGGCTGAGCTTTGCTACCATAGTAGAAGACACAGTGTTGAGACTCCTGAAGAAAGTGAAACAGGATGATAAGGACAAAGAGTCTGAAGCTCAGAAGGATTTTGACCATGTGTGGGGCATCATAAGCAGCACTGCCATTAATCAAGATGGCCGCACAGTCACTCCAATCACCAAGCCCTCCGTCATCCAGCAGGAAGAGCTGCTGAAAACCATTTACTGTGCACAGATTGACCCTTCACATATCCAATATGTAGAGGCTCATGGGACAGGAACCCCTGTAGGGGATCCTGCAGAAGCAGGCAGCATCTCCAGCATCATTGCCAAAGCCCGACCCCAAGGATCACCAGCTCTTTGCATCGGCTCTGTGAAAGACAATGCAAGCATCGATGCCAAAGTCCTGAACCTCAGAGTGCCCACCACAGCAGTGAAGTGGGAAAATAGTGGGCCACTGGGAAGGGCTGCAGccccagccccagccccagcctcTGACCTGTCATCTGTAGATGAGCCACCAGTCCACCATCCAATACTGAAGCGCTATCCAACTACAATGGGCGGAGCCGaaaattataaaATTCATGAGAAACTGCAGTACTATGAGCAGCAGTGTCCGGTACCGGTCCTGCCGAGCGCCGGGATCTTGGCTGATGATCTGGCTGAGGAGCTGCAGAGCAAGCCAATGAACAGCGAGATCCGAGAGCTGCTGAAGCTGCTGTCGAAACCTCATGTCAAGACTTTTTTCACCAAACAAATCCTGGAGGAAGGTCCGGTCTTCCTGGCTGTCTACATGCGGCTGGAGCTGGGTAGGTTCTGGCGAGTCGTGGCTTCTATATCCAAAGTGCTGGCAGATGTAATGCTCACAATAGAACACCAGGTGTCGTAA
>TU40495
AACTCACCCTACCCCCCTCCATGTACCAACCGACACGCCTCCTTGctgtctttaaaaatgaaaaatgaaatctttCTACGCTTGCCTTTCAGATTCATGAGAAACTGCAGTACTATGAGCAGCAGTGTCCGGTACCGGTCCTGCCGAGCGCCGGGATCTTGGCTGATGATCTGGCTGAGGAGCTGCAGAGCAAGCCAATGAACAGCGAGATCCGAGAGCTGCTGAAGCTGCTGTCGAAACCTCATGTCAAGGTGAGGAGTCCCTTATTCCAgtgcacacatatacacatttgcAACGATGACCCTCACAAATATCATTCATTAGTTTTAGACCATTTTGTATGTTTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019213 True 957 mRNA 0.51 10 9251152 9434114
TU40495 False 349 lncRNA 0.48 2 9312434 9313777

Neighbor

gene id symbol gene type direction distance location
AMCG00019211 wac coding downstream 826 9223290 ~ 9250326 (-)
AMCG00019210 bambi,LOC106578551,LOC106590018 coding downstream 36448 9209340 ~ 9214704 (-)
AMCG00019208 NA coding downstream 206180 9033791 ~ 9044972 (-)
AMCG00019207 NA coding downstream 266456 8968886 ~ 8984696 (-)
AMCG00019203 NA coding downstream 588205 8636550 ~ 8662947 (-)
AMCG00019216 NA coding upstream 61268 9495382 ~ 9549803 (-)
AMCG00019220 rab18,LOC106578546,LOC107566717,LOC106590026,LOC107708473,LOC107681801 coding upstream 280318 9714432 ~ 9726715 (-)
AMCG00019224 LOC106590299 coding upstream 302153 9736267 ~ 9747253 (-)
AMCG00019226 NA coding upstream 327608 9761722 ~ 9789110 (-)
AMCG00019225 NA coding upstream 366938 9801052 ~ 9812613 (-)
G32144 NA non-coding downstream 875748 8338036 ~ 8375404 (-)
G32096 NA non-coding downstream 1278927 7971193 ~ 7972225 (-)
G32076 cul2 non-coding downstream 1492925 7755253 ~ 7758227 (-)
G32061 NA non-coding downstream 1548076 7702842 ~ 7703076 (-)
G32057 NA non-coding downstream 1563983 7673755 ~ 7687169 (-)
G32586 NA non-coding upstream 1534015 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 1534403 10968517 ~ 10968773 (-)
G32635 NA non-coding upstream 1684594 11118708 ~ 11119507 (-)
G32693 NA non-coding upstream 2162702 11596816 ~ 11600671 (-)
G32706 NA non-coding upstream 2199395 11633509 ~ 11636317 (-)
AMCG00019209 LOC106600477 other downstream 349274 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 2566851 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 4264768 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 4310485 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 5021161 4220443 ~ 4229991 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 2417994 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 2979040 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 3734322 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 4228002 13662116 ~ 13665230 (-)
G33163 NA other upstream 5057777 14491891 ~ 14558290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1271297 LOC106590247 non-coding NC_048579.1 CM023233.2 23196452 ~ 23203364 (-)