AMCG00019214


Basic Information

Item Value
gene id AMCG00019214
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9357098 ~ 9376745 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019214
ATGACCTTCAGATTTCCTTTTTCCACAGCGTTTGCTTTGATCGCTGGAGAGCTGGAGAGGCAGAAGGGGCTAAAAAAGTGTTTGTTGAAGgtGCATGGAAGAGGACGTGTGGCTACCGAGTTCAGTGAGAGCTCCACAGATGAGGAtgacaatgaaaacaacaataggCCGAAGCTCCTACAGCAGAGCACCTCAGACCTGCCTGCTGAGTGCGCTCAGATTGAAAAGCTGGCCAACATCCTCaagGAGTACAAAGCCATCGAAACCCTGGTTGGCCTGCTGACTGACCAGCCTGAAGAAGTCCTTGTCAATGTTGTGGGGGCTTTGGGAGAGTGTGCCCAAGAACCAGTCAATCGAGCGGTCATTCGAAAGTGTGGTGGCATTCAGCCACTGGTCAACCTGCTTACTGGAACCAATCAGGCACTACTTGTCAATGTTACCAGGGCTGTTGGCGCATGTGCTACTGAGCCTGAAAATATGGCGATAATTGATCGCTTGGATGGGATTCGCTTGCTTTGGTCCTTGCTGAAGAATCCAAATCCAGATGTTCAAGCCAGTGCCACAAtggcattgtgtgtttttatcgGAAACACAAAGACTGATGACAAACTGCGCCGTCACTTGGCAGAGGCTGTTGCTACCTGCTGTAGGCAGAGCAGCGGCAGAGTTTCCTTTGGGGAGGCTGGGGCTGTTGCCCCTCTAGTGCGCTACCTCAAATCCAGAGACATTGCAGTCCAAAGGGAAACGGCACAAGCCTTGTTTCAGCTTTCAAAGGACCCCAATAACTGCATCACCATGCATGAAAATGGAGTCGTGAAGGTAAGTTACCGGCTGTga

Function

GO:

id name namespace
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019214 True 837 mRNA 0.51 5 9357098 9376745

Neighbor

gene id symbol gene type direction distance location
AMCG00019206 NA coding upstream 301242 9046918 ~ 9055856 (+)
AMCG00019205 NA coding upstream 572159 8781781 ~ 8784939 (+)
AMCG00019202 arhgap12,LOC102789345 coding upstream 750978 8577925 ~ 8606120 (+)
AMCG00019200 NA coding upstream 815793 8540613 ~ 8541305 (+)
AMCG00019201 LOC101470268,LOC102291500,LOC102212547,LOC103361717 coding upstream 835244 8497875 ~ 8521854 (+)
AMCG00019212 wu:fc01d11,LOC107657783,LOC107554911,LOC107732095 coding downstream 30556 9407301 ~ 9414186 (+)
AMCG00019217 armc4 coding downstream 249665 9626410 ~ 9628658 (+)
AMCG00019218 armc4 coding downstream 277581 9654326 ~ 9663886 (+)
AMCG00019219 mkx,LOC107665863,LOC103377095,LOC106578547 coding downstream 300915 9677660 ~ 9714621 (+)
AMCG00019227 NA coding downstream 355445 9732190 ~ 9745637 (+)
G32290 NA non-coding upstream 4443 9349849 ~ 9352655 (+)
G32287 mpp7,LOC106578549 non-coding upstream 33035 9308637 ~ 9324063 (+)
G32268 NA non-coding upstream 134589 9163643 ~ 9222509 (+)
G32235 NA non-coding upstream 423352 8895239 ~ 8933746 (+)
G32113 NA non-coding upstream 1185237 8171645 ~ 8171861 (+)
G32321 LOC103376870 non-coding downstream 316524 9693269 ~ 9750270 (+)
G32324 NA non-coding downstream 341277 9718022 ~ 9718564 (+)
G32325 NA non-coding downstream 342294 9719039 ~ 9726753 (+)
G32418 NA non-coding downstream 433139 9809884 ~ 9812637 (+)
G32437 apbb1ip non-coding downstream 540575 9917320 ~ 9920036 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 8279 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 972506 8345455 ~ 8384592 (+)
G32005 NA other upstream 1936015 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 3417501 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 4988895 4319596 ~ 4368203 (+)
G32539 NA other downstream 1027894 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 5062508 14439253 ~ 14486706 (+)
G33283 NA other downstream 5787603 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 6178074 15554819 ~ 15626955 (+)
G33406 NA other downstream 6667197 16043942 ~ 16081943 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004707 NA non-coding NC_007123.7 CM002896.2 23037447 ~ 23040091 (+)