AMCG00019219 (mkx,LOC107665863,LOC103377095,LOC106578547)


Basic Information

Item Value
gene id AMCG00019219
gene name mkx,LOC107665863,LOC103377095,LOC106578547
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9677660 ~ 9714621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019219
ATGAACACCATCGTGTTTAATAAACTCAGCACTCAAGTCCTGTTTGAGGAAAAGGCGAAAGAAGTGGAAAGGAGCAGCAGGAACTATTTGGAAGTCATCGATGGTCAACATCCAGAGCTCATCTCCAGCAGCCACACAGGCAAGGACAGCTCCGGCAGCAGACACAGGAGGTCCGGGTCCCGTCAGAGTGGAGGAAAGGTGAGACACAAACGACAAGCTTTGCAGGATATGGCTCGTCCTCTGAAACAGTGGCTTTACAAACACAGAGATAATCCTTATCCGACAAAAACTGAGAAAATCCTCCTGGCACTTGGCTCACAGATGACTTTAGTTCAGGTATCTAACTGGTTTGCCAATGCCCGACGGAGACTGAAGAATACTGTAAGACAACCTGACCTAAGCTGGGCTTTACgcattaaattatataacaaaTACGTTCAGGGGAACGCAGAGAGGCTAAGCGTGAGCAGTGAAGACACATGTTCAGAAGATGGCGAGAATCCATCCCGGACCCAGCCAAGCACCGCTGAGTTCAATAAGCCCATGTACCAGAGTGTCATTAAGAAGGAAGGCACCGTTGTCAGCACTGGACTGAGGGCAGACGCGTCTCTCAGTGAGGATTACGTGTCGCCACCGAAATACAAGAGCAGTTTACTGCACCGGTACCTCAACGACTCTCTGCGCCACGTCATGGTGTCCAGTGCCGTCATGGACTCGCGCAAAAGAAACCATTCAGGATCTTTTAGCTCTAACGAGTATGACGAAGAACTACTCTCGCCTTCGTCTTCTGAGACTGAAGCAAATTTTGTTTATCGTGCCGAATCCTATGGAGAAAAATCTTGA

Function

symbol description
mkx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in cell development; muscle organ development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including collagen fibril organization; regulation of gene expression; and tendon development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein Mohawk isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24890 MKX; homeobox protein Mohawk

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019219 True 843 mRNA 0.49 5 9677660 9714621

Neighbor

gene id symbol gene type direction distance location
AMCG00019218 armc4 coding upstream 13774 9654326 ~ 9663886 (+)
AMCG00019217 armc4 coding upstream 49002 9626410 ~ 9628658 (+)
AMCG00019212 wu:fc01d11,LOC107657783,LOC107554911,LOC107732095 coding upstream 263474 9407301 ~ 9414186 (+)
AMCG00019214 NA coding upstream 300915 9357098 ~ 9376745 (+)
AMCG00019206 NA coding upstream 621804 9046918 ~ 9055856 (+)
AMCG00019227 NA coding downstream 17569 9732190 ~ 9745637 (+)
AMCG00019222 NA coding downstream 73740 9788361 ~ 9792594 (+)
AMCG00019221 LOC107687524 coding downstream 98769 9813390 ~ 9824416 (+)
AMCG00019237 abi1a coding downstream 158964 9873585 ~ 9884570 (+)
AMCG00019236 NA coding downstream 179240 9893861 ~ 9905733 (+)
G32290 NA non-coding upstream 325005 9349849 ~ 9352655 (+)
G32287 mpp7,LOC106578549 non-coding upstream 353597 9308637 ~ 9324063 (+)
G32268 NA non-coding upstream 455151 9163643 ~ 9222509 (+)
G32235 NA non-coding upstream 743914 8895239 ~ 8933746 (+)
G32113 NA non-coding upstream 1505799 8171645 ~ 8171861 (+)
G32324 NA non-coding downstream 3401 9718022 ~ 9718564 (+)
G32325 NA non-coding downstream 4418 9719039 ~ 9726753 (+)
G32418 NA non-coding downstream 95263 9809884 ~ 9812637 (+)
G32437 apbb1ip non-coding downstream 202699 9917320 ~ 9920036 (+)
G32490 NA non-coding downstream 394285 10108906 ~ 10109150 (+)
G32293 armc4 other upstream 48998 9369898 ~ 9628662 (+)
G32286 NA other upstream 138449 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 328841 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 1293068 8345455 ~ 8384592 (+)
G32005 NA other upstream 2256577 7420501 ~ 7421083 (+)
G32539 NA other downstream 690018 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 4724632 14439253 ~ 14486706 (+)
G33283 NA other downstream 5449727 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 5840198 15554819 ~ 15626955 (+)
G33406 NA other downstream 6329321 16043942 ~ 16081943 (+)

Expression


Co-expression Network