AMCG00019221 (LOC107687524)


Basic Information

Item Value
gene id AMCG00019221
gene name LOC107687524
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9813390 ~ 9824416 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019221
TTGGAGCggatttcaaattttgaaaaCAAGTCCAGCGGGTGTGTGTGGGGAAGGCGGAGGTCTCGTCTTTCTTGTCCATGTTTTGGTTTAAACGACACTGAAAACCTTCAGAACAATATTTTTTGGgggaataataatttaagaattTATACAATTTTCAATTCTATAGCGGACGCAGTAGATGGTCACTTTTCGCTTCACATTTACCAGAAGCTGAAAGCTCTGTCCCCGGTGTCGGCAGTTATGGACGGAGAAGATCAGCCCGATGACCTGATGAAAGGGGTTTCTGGAGGCGCCAGGCCGGCCTCGGTCGAGGACTTCGTGGTCGTGAAGCCGATCAGCCGCGGTGCCTTTGGGAAGGTCTTCCTGGCACGGAAGAAAAGCAATGCCCGGCTCTATGCGATCAAGGTCATGAAGAAGGCtgatattgttattaaaaacatgatagACCAACTGAAGGCAGAGAGGGATGCACTGGCTCTGAGCAAAAGCCCTTTTATTGTGCACTTGTACTATTCACTGCAAACAGCTAGAAACATATACCTGGTAATGGAGTATCTCATTGGTGGAGATGTTAAATCTCTTCTTCATGTATATGGTTATTTTGATGAGGACATGTcggtaaaatatatttcagaagtTGCACTCGCGTTAGACTATCTTCACAGACATGGCATCATTCACAGAGACTTAAAACCAGATAACATGCTTGTTTCCAACAAAGGCCATATCAAGCTGACAGACTTTGGGCTTTCAAAAGTTAACCTAAATCGAGAGTTGAACCTGATGGATATCCTGACGACGCCTTCCTTAGCAAAGCCGAAGCAAGATTACTTTCGTACGCCTGGCCAGGTTTTGTCTCTGATCAGCTCCCTTGGTCTTAACACACCAGCAAAAGGCAAGCTGTCCAGTTCAGCTTCAGCACAAGCCAGCCCAATGTCCTGTGACAGAGTACAGCATTTTAGAGGGTCGCACTGCTCACCTttgttgagaagaaaaaaacaaatgttacttAGTTCTCCAGTTTGCAGCCCCAGTGTACTCCGTGCATCATACGCCAACAGTTCAACATTCAGTCCTGGTGTTCCAGTGAAATGTCTGACTCCAAGGCTGTTAAAATCGAGGAAAAGGTTCGAGTCTTCCAGTGTCAGCAGTCAGTCCTGCCTTTTCCCTTCTAGTACAGAGTCTGATAGCTGTATCAGCCCTGTGTGGGATTCTGAACAGCAGcaaatgggagagaaagagaatttCCCAAATGCACATGAAAGGACTAGGGTTACCAATACAGTACCTGGGGATCTCAGTGCTGGGAGGATTCGTGGAGGGAATGCAGTGAATGATTTCAGGAAACTGAGCAGGGATTCTGTTCTTGGACCAGCTGAACATTGTGAGCTTGATAGAAGATCTCAAATAGGATACCTACAATCTGCTCCGAAAGACACTTCCaggaaatgtgtatttgaaaatgagtgttttgaaaaaaagaaactgcagttCAATGAAAATGAATCTTCTGTTGCTACTCTGCAGAATCATGCTTCTAATTCCAGAACTCCAAGTAAAGCTGCTTCCAAGACGAACCAGGAAGTATGCCCATCCATACAGGTGGACAGCAAGGCAAAAGCCAGCATTAAAGAGGCCACTGGTGAACAGAATGGAGCTGTGAAGAGAGGTTTTGAGCAGGTCGACAAAAGTCCTAACGAAGTCATTCAGCTCAAGAAAACCACTGCTGAATACAAACGAGGGTGTCCAATATCAGAAAAAGAGACTACGTTCAGTACAGGCTTGACTATGGAGTTTGCTTCGGTGATGCTTGAGGATATCAGAGGTGGTACAACTAAAACCACAATTGCAGAAGATGAAATGTTAGGAAGGACCAGTCCTATTCCTGTAGCTAAGAACCTGTTGGGTGAACTAGATGAACAACCTGGAAAGCATAACCATAAGGAAGTTATTAATTCCAGCTTTGTGTCTgttgatgaagatgatgaacAATTGAGAACTCTAAACCTGGGCTTAAACTGCTCAGCTCATGACCTGTCTAATATTACAGCTATCCTTGACAAGGACATCTGCGAAGTGGATGACTGTGTGAAAGACATATCGTTTGAAGATGCTAACGAGAACGAAGGCTCCCTAATTTTCCATCAGGATAATTTGCCCTGTATCAACAGTAGTAACGGCTCAAAGCCTCCTCATTCTTCTTCTCAATTAATCcaggcaagagagagagagcactttTTTGATTTCCACCCTTTACAACCCTGTGTGGCAAAGAAACCTCCCTCTGCCCTTAAACAAAAGAATGTTGTGGCTTTCAGAAGTTACTGCAGCTCAATCAATAGGTCCAACATGACTGTGAGCTCACGGATGAGTGTTGGCTCTCTGGATGTCATGGAGATGTCAACGACCTCCTTCAGTAGTATTCCAGTGGCTGTGACTCCTGTGCAGAAGAGCAGACGATCCAGCACAGCCAGTTCACAGTATCAGACTCCTCAGCAGACCCATACCCATACCCCATTCAGGACCCCAAAGAGCGTGCGCCGAGGACCGGCTCCTGTGGATGGAGGGCCTCTCCTGGGGACTCCAGACTATCTGGCTCCAGAACTGCTTTTAGGAAAACCTCATGATTTCATGGTAGACTGGTGGGCTCTTGGCGTGTGTCTCTTCGAGTTCCTGACGGGAGTGCCTCCGTTCAATGATGAAACGCCACAGCAGGTGTTCCAGAACATACTCAACAGAGACATACCTTGGCCAGAAGATGAAGAGGAGCTGTCACACAATTCAAGGAACGCCATCGAGATTCTTTTGACCATGGACATGACCAAGAGAGCAGGACTAAAAGAACTCAAACAGCATCCCCTATTTGAGGGTTTGGACTGGGAAAACTTACAGGATCAACCCATGCCTTTCATTCCCCAACCTGACGATGAGACGGATACTACCTATTTTGATGCTAGAAATAATGCCCAGCACCTGACTGTTTCTGGCTTTAGTTTATAGTggttagattttgttttctttccaatttATGTATAGGTCGCATACTATACCATAGAggtgagattaaataaaaactaaaaaagtctACTGATGACAAATGTGCAGTGATTTTCAAAAGAGGCAAAATAAGATGTGGGCAGCAAAGTAATTTCTAAAGCCTCATCTGGGACACCCAAACTTATTTCAAATGGTACATGTAGAATGTATCATGTATCCACATTCTGcacctttaaaatacaaatgtattgatttggtTACTTAAACCAGGCTTTAATAATTATTGTGTAACCAGCTTCTTATACTGACCCTTTTGAAAATGATGCTGTTAGTGTTTAACATGGGAGAGTGCAATTATCTTGCATCCAATAGGACATCCGTCTTCATGAGAAAACACTGGAACGTAGGCCAAGTTTTTCCAACCGAGGGACAATTTTAGTAATGATGGAAGATTCTATATCGCTACAGTTTTAACCGTGCTGTTTgagaatattaatatatatatatttgattatattttcattattttgatcaTGTAAGTTATATGGAATATTGTGCAATGTTTCCGTAactgtttgtattgtttgtcacagtgcttttgtaattttaattgtcagcCCATCTTTCCACATTCTTAGTTGCAAATGTATGTTCTTGTTGTTAAACCTTATTACTAAATGCAACTAATGCTAAGTTATGTTGCAACATActtttactgtaaaacaaaatgataaaaactCAACACTAATCATGGATTGAAACCTAAAACCAATATAAACTACTGTGCCAAAGCATAACATGCTTTATAAAGGGGATTTATGCAGCTCCCAATATGCAGCGTGCAGTTTTCAGCTTTTCAGTCTTTTTGTTAGTGCAACGATTCCTGGCATTTTTAGTGGTGTTACAAATAAAGGATTATGTGTATAGCATTTAGAACTGTGTAAATGATCAAAGTCATTTTCCCTTTGTGTATGCAATATAACCTGTTTTCTCATCACAATGTACTTTCTAACCCACAGGTGTTTGTGGATGTAATAATCGTCCCAAGTGTAACATGACATCCTTTACCTGGATTGTTTGGGTTATTTTTTGGTCCTGTAATCATAGGCAACTAATGTTTTGATTGGAATTGTTTAGTttgaaaactaaactaaagcaGTCTAGAAACCACAGCTTTCATAGGCCACTATTAGGacttttcttttcacacagGGATGCACTAGTGGAAACCAGGAATCTAgggaaattaatacaattaatacaaattaatgacGGCTGCAGATCTCCATTGTTCATTGTTGTGTAGTGATTTTATAAAGTGGTGGTTATAGCCTCGACAACAGtcccaaaacacattttgtgattTGCTACAGGTCTCCTTTGCTGTTTTCTCATTCCCAGCAcctgccattaaaaaaaaaaacttgctgaATCGCGAAGGACACGGCCCTCATTCGGTCACCCAATGTGAAGAATGTTTGCCAGACGTAGGAGGGATTCATTCCACACGTGTAAACATACTACAAAAAGGAAGAACTACATTTGTGCcctgttaaaaatgtacatgcatACACTGACACTTCATGCCCATATTTCTAGTTACAAAACCAACATGGTAACAAGTACATCTGCTTTGCATATATCTAGTAAGTCCAATTTAACTGGACTTCCCCCCCCTGTATGGTCATTTTGTAATGCATctatatttatctgtttatcaatccatctgttatttttttaaatttgtacaCCACTTACTGGCTAACACAGGTATTTTGAAAattcaatacatgtttttatcagaagttgtaaaatgtgcttttggCCTGGTTTCCACACTACAGAAGTTTGGGTTGATTTTATTGATGTGATATTTCCTTTAATGTTACATTGTAGTTGTTTATCCAATCTTTGTACAATATCTACAATGTccagtaaaaaaagaaatatattaaagcgTTTAACAAAAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase greatwall-like isoform X2

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0051301 cell division biological_process
GO:0016310 phosphorylation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005488 binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K16309 MASTL, GW; serine/threonine-protein kinase greatwall

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019221 True 4970 mRNA 0.41 12 9813390 9824416

Neighbor

gene id symbol gene type direction distance location
AMCG00019222 NA coding upstream 20796 9788361 ~ 9792594 (+)
AMCG00019227 NA coding upstream 67753 9732190 ~ 9745637 (+)
AMCG00019219 mkx,LOC107665863,LOC103377095,LOC106578547 coding upstream 98769 9677660 ~ 9714621 (+)
AMCG00019218 armc4 coding upstream 149504 9654326 ~ 9663886 (+)
AMCG00019217 armc4 coding upstream 184732 9626410 ~ 9628658 (+)
AMCG00019237 abi1a coding downstream 49169 9873585 ~ 9884570 (+)
AMCG00019236 NA coding downstream 69445 9893861 ~ 9905733 (+)
AMCG00019234 NA coding downstream 115410 9939826 ~ 9947046 (+)
AMCG00019235 NA coding downstream 446203 10270619 ~ 10279108 (+)
AMCG00019238 NA coding downstream 458573 10282989 ~ 10304824 (+)
G32418 NA non-coding upstream 753 9809884 ~ 9812637 (+)
G32321 LOC103376870 non-coding upstream 63120 9693269 ~ 9750270 (+)
G32325 NA non-coding upstream 86637 9719039 ~ 9726753 (+)
G32324 NA non-coding upstream 94826 9718022 ~ 9718564 (+)
G32290 NA non-coding upstream 460735 9349849 ~ 9352655 (+)
G32437 apbb1ip non-coding downstream 92904 9917320 ~ 9920036 (+)
G32490 NA non-coding downstream 284490 10108906 ~ 10109150 (+)
G32549 LOC103376870 non-coding downstream 638747 10463163 ~ 10508063 (+)
G32671 NA non-coding downstream 1553540 11377956 ~ 11448251 (+)
G32674 NA non-coding downstream 1807942 11632358 ~ 11637880 (+)
G32293 armc4 other upstream 184728 9369898 ~ 9628662 (+)
G32286 NA other upstream 274179 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 464571 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 1428798 8345455 ~ 8384592 (+)
G32005 NA other upstream 2392307 7420501 ~ 7421083 (+)
G32539 NA other downstream 580223 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 4614837 14439253 ~ 14486706 (+)
G33283 NA other downstream 5339932 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 5730403 15554819 ~ 15626955 (+)
G33406 NA other downstream 6219526 16043942 ~ 16081943 (+)

Expression


Co-expression Network