AMCG00019223


Basic Information

Item Value
gene id AMCG00019223
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9824740 ~ 9836871 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019223
TGGAAGTTAACTTATTCTGTGATCTTTTGTGGCGATAATTGTATACTATATTAGACAATAATTAAAGACCTTTGAACTGCGATATATGACGCCAACACTGTCGGCACTGtcggtttattttttaatgcagacaGCTACCCACAGATATTTATAATCCCCAGGTTTAAAGGTTTGCTGCTGACACTTTCCATTTTGTGTCACAATGGCGGATGAAAGACCGATCCACGAACAAAGGTTTGACGCTGCAGTGAAAGTAATTCAGAGTTTACCACAAAATGGTTCATTTCAACCGTCCAATGAAATGATGCTAAAGTTTTATAGTTATTATAAGCAAGCTACACAAGGACCCTGCAACATTCCCAGACCTGGCTTCTGGGATCCCATTGGTAAATACAAATGGGATGCATGGAATTCTTTAGGAGATATGTCAAAGGATGAAGCAATGATCGCATATGTTGAAGAAATGAAGAAGATTCTGGAGACGATGCCGATGACAGAGAAAGTGGAAGAGCTGCTTCATGTTCTGGGACCCTTCTATGAAATTGTGGAAGACAAAAAGAAGATATCCAACGTATCTGACCTAACCACAGGGTTTGGAAGCATGTTGACGTCGACCCCGAAGTGCATCACAATGAACGGCAAATTGGAGAGCAGCGACAGTGGAGCCGAGTCGGAAAAGAttgaggatgaggaggaggaggaggaggaagaagaagaagaggaggaggaggagaaggaggagaaggaggagactGAGAAAGAAGAAGATGTTTCAGACCTGACAACAGAGATCAAGGACTCGTCAGGAAGAGAGACGATGCCCTTTGCCAATGGCAGTGTAGAGTACAGCGTTCCCTCTGTAGTTACCAAGACGGACAGCAGGGCTTTGCTTAACAGTGAGGACTGTGAGGAGAAATCGAGCCACAGCGACCAGCCTCCCGAGCCCCCTGTGCTGTGCGAGATCAATGGCCATCTCAGTGATCTCAATGAGGATGTCTCCAGCCTGCATCACTTAACAAGCGACTCGGACAGTGAGGTGTACTGTGATTCTATGGAGCAGTTTGGTCAGGAGGAGAGCTCCGAGATTCTCATCAGCCACTCTATGGAGACGGGTGAAGTGAGTCGCAGTGCCCTGTTGTTCAGGACAGAAGTGGTGCAGGCTGGAGAGCTGTCTGGAAGAGGGACTCTGCAGGCAGGACCTGAggccgtcaaacatggaggggAAGACGGAGAAGCCGGCGGAAACcccccacagagagagagtctgAACACGGAGAGGTCTGACAGCGCGGGACCCAGGAGAGGCAGGgGTGTCAGGACACAGGGCGTGGGTGGAGGAGCGCAGGGGGGCCTGCTGGGCAGTGGGGGTGACGGAGAGCGCTGGGGCACAGAGAGCACATCCAGGGGAAACCTGAACGAGCAAATCGCTGTGGCCCTCACCAGGCTGCAGGAGGACATGCGTAGTGTGCTGCAGAGACTACACACTTTAGAGGCACTTACAGCATCTCAGGCTAGATCATTATCTTTACAAGAAAATTATCCTTCTCCTCCAGTAAAGAAGAAACCATCCTGGTGGCCTTTTGACATCTCCCCAGGCATGCTGGCCTTTGCTGTGGCATGGCCTTTCATTGTGCAATGGCTTGTGCGTGTCTATCTGCAACGAAGGAGAAGGAAAATGAACTGATAGATGGGATGTCCTGAGGGAAAGACGGCTCAGTGCATTGCAAGCTCTTGAGGTCCTGTTAGTTTAAAGGGACTGCGTCACCCTTGCCCTCTGTGTGTATAATTCCTGCTTTTGCACTACAATGATGGCACTATTAGAAACAAGTGGCAACCTTTACAGCATCTACTGATACAAGAAATGGATTTAGTcattcaaggaaaaaaaaaaaagtgaatgtatgGTATTCCAACTTATAATCATGCAAGTTTTTAATACGACGACTGTGGTAGAAAGGACAGTCAAGATTCCTTTTCCGAATTACTGCATATAATGAATTTGAAGGAAAGACGTTGGCTATGTGTGGTTTAATAgtatgttaatggtttgattgTAGTAAAACAACTTTGGTTTTAACTTTTCTGTTTAAACCTAATCTCTTTGAAGCATGTAGACCAGCATATGTCTCAGTGTCAGGTGTAAAGGTCATTACGATTACATTATATTGTTCAAGGCTTTTTGTACCCTGAAATTTGTTTCCTGTAGCCTTCTACTATGTGGTtacatattgtaaattaaaccaTTCACCATCTCCTAATGTCTGCCTGCCTGACGGTTAAAGTCTGCTAAAGAGTCTGGGCAGATCTGTGGTGAGACTCACTGAATGACGTGGTACTCTTAGTACATATATCATTTATTGTGCTGCATTACTAATACAGCCTAATGATTTAATCAAGATCTAATTAACCTTtgatatttacaatacaattaaaaggcTAGAAATTTGGtgacaaaaaaaactatgtaaACCATATCCAAAGAATGCAACAGGATACAGAAAATATTTCCAAAGACTTCCAAGGTACAGCATTGCGGGTTGGTGGCATCTTGGTGATTGAAAGGATACGTGTTGAGTGACAGCCCAGTGCAGAGCCTTGACTTCATCAGTGTATGGTTTCCTGCTGTGAGACACTTTGCTACATCCTCTGAGGCCCTGAAATCCATTTGGTTTAATTATgattctttttatttgtgttttgtttagttttttttacatttcatctgTTAAATATATCTTCCttcaccatgttttttttactgtcatGAAGTTGAGCTAAAACGGTGTAAAGAAATCTTCAGTCCCTTTTATGCTTCTCATGAAgccaagaaaatatttaaatgtactgcaCAGTAGTACTAGCAAGGATATTTTAATTCCAATATTTATGTTCTAATACTCTTTATTTCCCACTGAGCTGTTATCTTCAGCTACAGTatccttgtttatttttcttgtagtGTAAATTGTCTAATACTGTTAATAATAGCTGTACAGATCAGATTGTAGAAACTATGAAgataaaaatatgcaatattttaattgcactgtattgATATGGCTAAGAGTATAGAAGTCTATATTCAGTTAATCTGTAATTGTAAAGTATGCATTGGCAACAGAACTAATTTTAGTTCTAGACCTGTTGTTTTGTTAAAGCATATACTGCACTAtctttttatgaaaatgaaactaatattgctttcacttttttctttcacaaatggGACAGCTAAAAGCATGATAAACTTAATATTGTCTGAAGCATGAATAaagttttcataattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019223 True 3288 mRNA 0.42 12 9824740 9836871

Neighbor

gene id symbol gene type direction distance location
AMCG00019225 NA coding downstream 12127 9801052 ~ 9812613 (-)
AMCG00019226 NA coding downstream 35630 9761722 ~ 9789110 (-)
AMCG00019224 LOC106590299 coding downstream 77487 9736267 ~ 9747253 (-)
AMCG00019220 rab18,LOC106578546,LOC107566717,LOC106590026,LOC107708473,LOC107681801 coding downstream 98025 9714432 ~ 9726715 (-)
AMCG00019216 NA coding downstream 274937 9495382 ~ 9549803 (-)
AMCG00019229 pdss1,LOC107675251,LOC107687541 coding upstream 49397 9886268 ~ 9893224 (-)
AMCG00019228 NA coding upstream 67292 9904163 ~ 9924355 (-)
AMCG00019232 gad2,LOC107687529 coding upstream 122599 9959470 ~ 9977696 (-)
AMCG00019233 NA coding upstream 144865 9981736 ~ 10034056 (-)
AMCG00019231 myo3a coding upstream 211778 10048649 ~ 10052298 (-)
G32351 NA non-coding downstream 472088 9349849 ~ 9352652 (-)
G32144 NA non-coding downstream 1449336 8338036 ~ 8375404 (-)
G32096 NA non-coding downstream 1852515 7971193 ~ 7972225 (-)
G32076 cul2 non-coding downstream 2066513 7755253 ~ 7758227 (-)
G32061 NA non-coding downstream 2121664 7702842 ~ 7703076 (-)
G32586 NA non-coding upstream 1131258 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 1131646 10968517 ~ 10968773 (-)
G32635 NA non-coding upstream 1281837 11118708 ~ 11119507 (-)
G32693 NA non-coding upstream 1759945 11596816 ~ 11600671 (-)
G32706 NA non-coding upstream 1796638 11633509 ~ 11636317 (-)
AMCG00019213 NA other downstream 390626 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 922862 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 3140439 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 4838356 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 4884073 4932349 ~ 4940667 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 2015237 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 2576283 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 3331565 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 3825245 13662116 ~ 13665230 (-)
G33163 NA other upstream 4655020 14491891 ~ 14558290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location