AMCG00019225


Basic Information

Item Value
gene id AMCG00019225
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9801052 ~ 9812613 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019225
TGCCAGCTGCGAAGGAGCTACGGGGGAAAAAGGACGAAAGTGGGGGGTTCAGGATTTAACAATCAATATTAAACCACTGCTGTCAACATTGACTTTGTTACACAGCATTGGACATGTTCTCTCTGTCGACCACGGTTCAGCCACAGGTAACCGTCCCTCTGAGTCACCTCATCAATGCCTTCCATTCCCTGAAAAGCTCAGCCAGCTCTGTAAGCACGGCATCTGTTCagtgtctgcagagagagaccACTCTAGAGCTTGACCTTCAGAGCAGCGAGCCCACATTAAACTTGAGGGATTTGGGCCTGACCGATCTGAGAGTTAGTCAGCTGGATGACCTTGTGAACAGACTTCTTCCCAGTCTCTCCACAGAGCAGCACCCCAGCCAGTCTTACTGGAGAACATCCCATGTCTCTGCAGAGTccttctttcaaaataaacatgGGTTCTCAAGCAGAACATTTGGTGTTCTGGGCTCCATGGCACTTTACAGACACAGCCCTAGTCCTCTACAGGCGGTTTGTTCAGACCTTCAGCACTGGCCAGtgtgGATCCAAAGTCGAGGCTTTAAAACGCTTAAATCCAAAACCAGACGCCTGCAGTCGAGTTCCGAGCGTGCTGCCGAACCAGAAGGTTACACTCCATCCTTCATGaagGGACTCCTGACGAGGGACAAGGTACCTGAAGTAGAAAGTTTAGACaaacttttgaaaaataaaaatatccccGATTCCCAGCATGATGCGTTCAAGACTGGATTTGCAGAGGGGTTCTTGAAAGCACAGGCACTCACACAGAGAACACAAGGCATGTTTTCTACCTATTCTTTGAGGAGGACACGGCTCATTCTGTTGGTGCTCCTGGTGCTGGGTATATATGGGTTGTCAAGAACACCCTTTTTATCTGTGCGATTTAGAACAACATCTGGACTTGATGCTGCTGTCGATCCTATCCATATGAAGAATGTCACATTTGATCACGTGAAAGGGGTTGAAGAAGCAAAACATGAACTGCAGGAAGTTGTAGAGTTTCTTAAGAACCCAGGGAAATTCACAGTGCTGGGTGGAAAGCTGCCTAAAGgcaTCCTTCTTGTTGGTCCACCAGGCACAGGGAAAACCCTGTTGGCACGAGCTGTGGCTGGTGAGGCCGATGTGCCGTTTTACTACGCCTCTGGCTCCGAGTTTGATGAAATGTTCGTTGGAGTGGGAGCCAGTCGCATCAGGAACCTCTTCAGGGAAGCAAAAGGCAATGCACCTTGTGTCATCTTTATTGATGAGCTGGACTCTGTTGGTGGGAAGCGAATTGAGTCTCCTATGCACCCCTATTCCAGACAGACCATAAACCAGCTATTAGCAGAGATGGATGGGTTTAAACCAAACGAAGGGGTCATTATTATAGGAGCAACAAACTTCCCAGAGGCTTTGGATAATGCTTTGATCCGTCCTGGACGCTTTGACATGCAGGTCACTGTTCCCATACCAGATGTGAAGGGGCGCACAGAAATCCTCAAGTGGTACCTCGACAAAATTAAAGTGGATTCTGCGGTTAATGCCCAAATCATTGCCAGAGGAACAGTGGGCTTCTCTGGAGCCGAGCTGGAGAACCTGGTGAACCAGGCCGCCCTGAAGGCCGCAGTGGATGGGAAGGACATGGTCACCATGAAGGAACTGGAGTTTGCCAAAGACAAGATCCTGATGGATGCTATGCCCATCAACAAGGCTACAATTATGCCAAGAGGACCTACTCTTGGTCATGTATCAATGCTCCCAGAGAATGACAGATGGAGTGAAACACGTTCTCAGTTGCTGGCACAGATGGATGTCAGTATGGGAGGAAGAGTGGCCGAGGAGCTTGTATTTGGACATGAAAACATTACTACAGgcGCATCAAGTGATTTTGACAGCGCAACCAAAATTGCAGTTATGATGGTGACCAAATTTGGCATGAGTGAAAAGCTGGGGGTGATGACCTATGGGGACAAGACAAAACTCAGCCCCGAGACACAAGCTGCTATTGAACATGAAGTGAGAATACTCCTGAGGGATTCATACGAGCGAGCTAAAAACATCCTGAAGATGCATAATAAAGAACACAAGAACTTGGCTGATGCTTTGTTAACGTATGAGACTCTGGATGCCAAAGAGATTCAAATGATTCTGGAAGGAAAGACACTGGGGGTGAGATGATGATTCTGGCACAGACTGCTGCGATTCTCCTGAATGTAAATATGCAATAGAGCAAGGGAGGGGGGCACTGAATGAAATTgtctagtttatttttcttaatatatgactatgtatacacattttatcCACCTTAGTATTTTCCTTCAAATATTCTGGGCAGGATTGGGGTTTCATGTGGGAATCATTTATCTTTTCCCCCATTGTGTCTTTAGTGAACAAATCACTGACGCTTCCCTACAAGTCAAAGGTATCTCAGGTGTACAGGCAGTTGACTTCAGAGTCATCAGTGTTTTGTAGAGTGTGTGTGgactctatttatttttatgttacatttttaatgtccGGTTCTGCCTTGAAAGTCTATAATGGAGTGTCCTTTGCTGTGTTATTACAGTAGGGTGTGTTACCTGATCACATCATACCTTTTATTTCCAACAtccagcattttattttctttttttcttttcatgattTGCTTTGTCAGTATGTACCTGAGAGAAGTGGAAAATACACctcaataataaacattaaaatttgCTTGAAatggtgattttattttggaCGTATTTAATTGACAACTGTCATATAAAACCTGAATTGTTTAAGGCCAAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019225 True 2798 mRNA 0.45 19 9801052 9812613

Neighbor

gene id symbol gene type direction distance location
AMCG00019226 NA coding downstream 11942 9761722 ~ 9789110 (-)
AMCG00019224 LOC106590299 coding downstream 53799 9736267 ~ 9747253 (-)
AMCG00019220 rab18,LOC106578546,LOC107566717,LOC106590026,LOC107708473,LOC107681801 coding downstream 74337 9714432 ~ 9726715 (-)
AMCG00019216 NA coding downstream 251249 9495382 ~ 9549803 (-)
AMCG00019211 wac coding downstream 550726 9223290 ~ 9250326 (-)
AMCG00019223 NA coding upstream 12127 9824740 ~ 9836871 (-)
AMCG00019229 pdss1,LOC107675251,LOC107687541 coding upstream 73655 9886268 ~ 9893224 (-)
AMCG00019228 NA coding upstream 91550 9904163 ~ 9924355 (-)
AMCG00019232 gad2,LOC107687529 coding upstream 146857 9959470 ~ 9977696 (-)
AMCG00019233 NA coding upstream 169123 9981736 ~ 10034056 (-)
G32351 NA non-coding downstream 448400 9349849 ~ 9352652 (-)
G32144 NA non-coding downstream 1425648 8338036 ~ 8375404 (-)
G32096 NA non-coding downstream 1828827 7971193 ~ 7972225 (-)
G32076 cul2 non-coding downstream 2042825 7755253 ~ 7758227 (-)
G32061 NA non-coding downstream 2097976 7702842 ~ 7703076 (-)
G32586 NA non-coding upstream 1155516 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 1155904 10968517 ~ 10968773 (-)
G32635 NA non-coding upstream 1306095 11118708 ~ 11119507 (-)
G32693 NA non-coding upstream 1784203 11596816 ~ 11600671 (-)
G32706 NA non-coding upstream 1820896 11633509 ~ 11636317 (-)
AMCG00019213 NA other downstream 366938 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 899174 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 3116751 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 4814668 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 4860385 4932349 ~ 4940667 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 2039495 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 2600541 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 3355823 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 3849503 13662116 ~ 13665230 (-)
G33163 NA other upstream 4679278 14491891 ~ 14558290 (-)

Expression


Co-expression Network