AMCG00019228


Basic Information

Item Value
gene id AMCG00019228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9904163 ~ 9924355 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019228
AGCACACCTCGTCTGTTACACaggaatcattttgtttcattaaggCTGTATGTTATCTTACAGATGGACGACATTGACGCAATGTTCAGTGACCTGTTGGGGGAGATGGACCTCCTAACACAGAGTTTAGGAGTAGAAACTATCCCCCCCCTGTCTCCATCCACCTCAAGTAAAGAACTTGACTTCCAATTTAAAGATCTGAATGCTCAATGTCTGAATTCGCTGGAAGACAATGACCTAGACGCGCTAATGGCAGATCTAGTGGCAGATATCAATGAAACAGAGGAGACACTAAGAGCACAAGGAACCATCTCCAACCAAAGCAGtctcccacccccccctccgGATTACAGCTTCCTCGCCCCTGCGTCATACTCACTCCCAGTACCTCCTGAAAACACCAGCTCCAGTGGGACTTTACCAGCTCCCAAAGCCCGGGCTCCTTCCCCCAAACCTCTGCCTCCTCCAGGACCTACCAAACCACTGACACAGGAGGAAATTGAGGCCCAAGCCAAAtctgataaaataaaacttgcttTGGAAAAGCTGAAAGAAGCCAAagttaaaaagACAGTCCGAGACATTCTGGACAACCTGTTTGAGAAGACCCACTGTGACTGCAACATCGACTGGACTCTGTTTGAATGCAGCTCTGACCTACAGATAGaGAGGGGTTTCGAAGACCATGAAAATTTAGTGGAACTGTTGTCTCAATGGACACGGGACAgcgaaaacaaaataatttttgtggagaggaaggaaaaatatgcagtttttaaaaacccacagAATTTCTACCTtgggaagaaggaaaaaaaggagatGAAGGACAAAGACAAGGAATCTCTCTTGGAGGACAGTTTCTGCGGGACGTCCCTCATTGTACCAGATCTTGAAGGGGCTCTTTATCTGAAAGAAGATGGAAAACGCTCCTGGAAACGGCGTTACTTTCTACTCCGGGCTTCTGGAATTTATTATGTACCCAAAGGAAAGACCAAGACATCGCGTGACTTGGCATGCTTCATACAGTTTGAAAATGTGAACGTCTATTATGGCACCGATTATAAGAATAAATACAAGGCTCCTACAGACTTCTGCTTTGTCCTCAAGCACCCTCAGATCCAAAAAGAATCTCAGTACGTCAAATACCTTTGCTGTGACGACAAGGCGATGATGGAGCTGTGGGTGACAGGAATACGAATAGCCAAGTATGGAAAGACACTTTATGACAACTACAAAATAGCTGTGCAGAAAGCTGGACTGGCCTCCAGATGGTCAAACCTCTCCATCGTTGATCCCATAACATCTTCTGTACCTTCCAAAGGTGCCGTTCATGCCAATGGCCATGCTGCCCAAGCCACAACACAAGTGACTCCACTAAACAAAGCCTTCTCTGATGCCTGGAAAAACTCAGAGACAAAGGACAATACTGGAAGTGATCTCTCCTATCTGCCTCCACCGCCGCCCCCAGAAGAGCAGCTGCCGCCCCCTCCGCCTGACCCTGTGATGCTGCCGCCCATGGGTGGAACCTGCCAACCGCCTCTATTCCTGCCTCGTTCCCCTAACACCAACCGAAGTGAGCAAATGCACTTCCCTCCCCCGCCTGAGGACAACCTACCCCCTCCTTCTCCTGACTTCACAGAGCCTCCCCCTGACTTcctgccccctcctcctccacgcATGGCCGCCAACTCtggggggggtggaggtggtCCTgctccaccaccacccccacccccacctcctccagctGCCAACCCTGCCCCGGCCCTCAAGAAAGTAGGTCCCCCTCCCCCAAAGAGGACCACCCCATCAGCAGCTTCCACTGGGGGTGGGCAGCAAGACTTCATGTCAGAACTGATGAAAGCCATGCAGAAGAAACACCAGCAATGAGGATCTGTCCTTATTACAATACAGCCTTACTGATTTTACTGTGACTTGTAAGCCCCAAACTATTTGGGGTGGAGAGATATTTTGCCATTGATACATACAAGACCATACAGTGGAGTCACTCATAAAGGTCAGATGGgatgagattttgtattccattTCCTAGTGAAAATTTGAAAAGAAAGGATTATCCATGCATCTTGAAGTTCTGACAACATTCTGAAGTTCgcttattttaattctgtattttttattattttttcatgtttttaatgttttaatttatcaacgtatgaacaacaatattgtgtatattaCTAACAtacctgtaaaaaataattgtatatatttatgctgCTTCATTGGCTTTCCAAGAAGATGGTTTCTGCAGCCTTTTAATAGACACAAGCATTTCTCAAGAGGGATTTCTGACCACTTGTCCACGCAGTATTTTCTCCTGCACTGCTTTTCCTTGATTGGGTTTAACACAAATCTTATACTGAGGTGAAGAACGTTGGTTTTAAGCTTCCTTAACCTGTCAGTTGTAGACTTGGATGTGTTCTTTGGATTGTCTTCCGATGCTGAATTCCAAACTTGCATCCAGATTACTGCATCCAAACTCGGGTTTCTTCACAAAGGACACCATGTGTCTGGCTGAGATATCCTGAAAAACTCTGGAACCAATCCACAATTCAAATAAGAGCACCAGGGCCGGAGGATGTAACATGGATCCAAAGTGTTCTTCACTGATGGGATCACATTTCTCAGCATGAATTTAAATTGGTTTGGCTGCAAACATACTTCTGATCTACATGTTGTTCAGTGTCATCTGACAGCAAAACGTGGTCCTAAATGAAACCGGAATTCGTTATGTGTGTTTTCTATATGTTGTCACTGGAAGACTATCATCTCCTTGCGAACCACAGAAGGACACCAGATTCATGCGACTGTCACTGAATTGTACTCTTGCAGATGCTGATGGTGCTTGTGGATGATGCCAGAGTACCCTGAAAATCCCCTTTGATTTCACTTCTGACTTTAGAGATATAAATCCTGTAATAACGATCAGATTTTTCCCACACAACGATAAATGGTACTGTGTGCTTCTGTGCACACCCTCCTTTAACACTGAAAGGTACTCGGAAGGCATTAAGATAtacatatcattattttttaacagctaTGCTATTGATATATGAGGGCATATATTACCATTTTACAAAGTTAATTATTTGGAAGCAACTGTAAACATGTACACCAATACTTACTGCTTTCAGGAAAACTTTATGTGAAATAGCATGATAGTATTTAGTGTAACTACACATACTGAATGACTGCATAAGAGATTACATATAGAATACAggtaaagtgttttttctttttctttttgtatttttattgtgaataaaatcagcaattgtattacttcaatgaagaaaaaaaaaaactgaaataaa

Function

GO: NA

KEGG:

id description
K17704 APBB1IP, RIAM; amyloid beta A4 precursor protein-binding family B member 1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019228 True 3347 mRNA 0.44 13 9904163 9924355

Neighbor

gene id symbol gene type direction distance location
AMCG00019229 pdss1,LOC107675251,LOC107687541 coding downstream 10939 9886268 ~ 9893224 (-)
AMCG00019223 NA coding downstream 67292 9824740 ~ 9836871 (-)
AMCG00019225 NA coding downstream 91550 9801052 ~ 9812613 (-)
AMCG00019226 NA coding downstream 115053 9761722 ~ 9789110 (-)
AMCG00019224 LOC106590299 coding downstream 156910 9736267 ~ 9747253 (-)
AMCG00019232 gad2,LOC107687529 coding upstream 35115 9959470 ~ 9977696 (-)
AMCG00019233 NA coding upstream 57381 9981736 ~ 10034056 (-)
AMCG00019231 myo3a coding upstream 124294 10048649 ~ 10052298 (-)
AMCG00019230 NA coding upstream 178196 10102551 ~ 10105694 (-)
AMCG00019239 NA coding upstream 219950 10144305 ~ 10158368 (-)
G32351 NA non-coding downstream 551511 9349849 ~ 9352652 (-)
G32144 NA non-coding downstream 1528759 8338036 ~ 8375404 (-)
G32096 NA non-coding downstream 1931938 7971193 ~ 7972225 (-)
G32076 cul2 non-coding downstream 2145936 7755253 ~ 7758227 (-)
G32061 NA non-coding downstream 2201087 7702842 ~ 7703076 (-)
G32586 NA non-coding upstream 1043774 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 1044162 10968517 ~ 10968773 (-)
G32635 NA non-coding upstream 1194353 11118708 ~ 11119507 (-)
G32693 NA non-coding upstream 1672461 11596816 ~ 11600671 (-)
G32706 NA non-coding upstream 1709154 11633509 ~ 11636317 (-)
AMCG00019213 NA other downstream 470049 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 1002285 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 3219862 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 4917779 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 4963496 4932349 ~ 4940667 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 1927753 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 2488799 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 3244081 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 3737761 13662116 ~ 13665230 (-)
G33163 NA other upstream 4567536 14491891 ~ 14558290 (-)

Expression


Co-expression Network