AMCG00019231 (myo3a)


Basic Information

Item Value
gene id AMCG00019231
gene name myo3a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10048649 ~ 10052298 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019231
ATGTTTCCACTATCTGGGAAATCAATTGTCTTTGACAACTTTCCTGATCCGTCTGATACTTGGGAAATAATCGAAACCATCGGGAAAGGGACATATGGCAAAGTCTTCAAAGTGCTGAATAAAATCAATGGAAGCAAGGCAGCGGTAAAGGTTTTGGATCCAATCCATGATATTGATGAAGAAATCGAAGCTGAATACAACATCCTTAAAGCCCTGTCTGATCATCCCAACGTGGTCAAGTTCTTTGGCATGTTCTACAAAAAGGACGTTAAAAATGGAGATCAACTGTGGCTTGTCCTGGAGGTATGTTTcccctttcttgtttttaatgtcatcTACTTTTTTATATCCTTTATGTGGCATGTAAAGCTCTGGATCTGA

Function

symbol description
myo3a Predicted to enable several functions, including ATP binding activity; actin binding activity; and cytoskeletal motor activity. Predicted to act upstream of or within protein phosphorylation and visual perception. Predicted to be part of myosin complex. Is expressed in axis; notochord; photoreceptor inner segment layer; polster; and retina. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 30. Orthologous to human MYO3A (myosin IIIA).

NR:

description
PREDICTED: myosin-IIIa isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019231 True 381 mRNA 0.39 2 10048649 10052298

Neighbor

gene id symbol gene type direction distance location
AMCG00019233 NA coding downstream 14593 9981736 ~ 10034056 (-)
AMCG00019232 gad2,LOC107687529 coding downstream 70953 9959470 ~ 9977696 (-)
AMCG00019228 NA coding downstream 124294 9904163 ~ 9924355 (-)
AMCG00019229 pdss1,LOC107675251,LOC107687541 coding downstream 155425 9886268 ~ 9893224 (-)
AMCG00019223 NA coding downstream 211778 9824740 ~ 9836871 (-)
AMCG00019230 NA coding upstream 50253 10102551 ~ 10105694 (-)
AMCG00019239 NA coding upstream 92007 10144305 ~ 10158368 (-)
AMCG00019240 NA coding upstream 184972 10237270 ~ 10238088 (-)
AMCG00019241 NA coding upstream 186129 10238427 ~ 10318815 (-)
AMCG00019243 NA coding upstream 352347 10404645 ~ 10432440 (-)
G32351 NA non-coding downstream 695997 9349849 ~ 9352652 (-)
G32144 NA non-coding downstream 1673245 8338036 ~ 8375404 (-)
G32096 NA non-coding downstream 2076424 7971193 ~ 7972225 (-)
G32076 cul2 non-coding downstream 2290422 7755253 ~ 7758227 (-)
G32061 NA non-coding downstream 2345573 7702842 ~ 7703076 (-)
G32586 NA non-coding upstream 915831 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 916219 10968517 ~ 10968773 (-)
G32635 NA non-coding upstream 1066410 11118708 ~ 11119507 (-)
G32693 NA non-coding upstream 1544518 11596816 ~ 11600671 (-)
G32706 NA non-coding upstream 1581211 11633509 ~ 11636317 (-)
AMCG00019213 NA other downstream 614535 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 1146771 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 3364348 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 5062265 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 5107982 4932349 ~ 4940667 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 1799810 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 2360856 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 3116138 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 3609818 13662116 ~ 13665230 (-)
G33163 NA other upstream 4439593 14491891 ~ 14558290 (-)

Expression


Co-expression Network