AMCG00019237 (abi1a)


Basic Information

Item Value
gene id AMCG00019237
gene name abi1a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9873585 ~ 9884570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019237
CTGAGAGGTCGTGGGATAGAGAAACAATGTTGGTGACTTCTCCTTGGACTCCAGGGCAGCACAATGCACTTTACTCGCTGTGCAAAACCAATTTTTGTGTTCTGGTTGAAAGACCTGAGCTGCTTCCAATAAGTTGTTTTGGCAACATGATGCCCAAGCTACCAGGGAAGAAATATTCACCACCTGCCCCCTGTGTGAGGGGGGTCTGCTGGGCTGTGTTTGTGaccgctctgtgtgtgtgtgcgtgtgtgctcTGCAGTGGCAGCAGTGGTGGCAGCGGGAGCCGGGAGAACAGTGGCAGCAGCAGTATTGGCATTCCCATCGCCGTTCCAACGCCCTCCCCGCCCACAATGGGACAAGcagcagcagttccGGGGCCAGGTCCAGGTGCAGTCCCTGGCTCTCAGTTTGGCACAATAACCCGGCAGATCTCTCGGCACAATTCCACAACCTCTTCCGTCTCTTCTGGGGGCTACAGGCGAACTCCTTCAGTCACGTCTCAGTTTTCTGTGCAGCCCCATGTTAATGGAGGGCCTGTTTATCCTCAGAACTCAAGTAAGGCTCATTGCTTTTCTCTTCTCTATGCTGCTTTCCCCACATGCAACAGATGTACACCTTGTTGAGCATTCATTATAGTTACTTAGTGCTTTATTCTGTACTTATGATGTACAATATTTATGGTTTATAATGTTCCATGAAATGCATATGTGCACACTTTCCacatgtatgtactgtatgtgaaGATGTAcaagctttttttcctttttggtttTCACTGCAGAAACACTGTAGTGCATGAAACACATTGAATGCCTACCCCACCCTTAATTAGAAAACTAgtgtttaatttcagtgcaCCACACCCTGTACTTGTTTGTTGAGTTCTGTTTTGATAATGAAACTGTTATCAGGGGCCCCATCTACGTAACTGATGGGAGGGTAGTCTGTCAGGGGGGTTGTTTGTAGGCATACATAATATTTTGGACAGGAAAAGTGCAATTTGGGTTCATTGTATTTACCATCTCAGGATGTACTTGAAAAGGGAGCAACATCCAGTAAAAGCCATCCCTATCCACACAGCAAATGAAGGCATTCATGCACTGCCTTTGTCTGCTGCCAGCTGAGTCATGAAAGAAGCAACTGCAGTCGGGTCTTTTAAAGTGATGAACAGCTATTAAATTAGACCTTCACTTTCTCTAGTCCATCTCCCCTTCAGCAGCTAAAGCAAACTGCAAAATAACAAGTTTAATCTGTTAAAATGGTGCCGGCCTTCCAACCAAGAACCATGCTGTTCCATTTTCTGTGTGTAATACAAGAGGTATTCATATAACCAATTCATATTGTAGGAAATGCTCAATATGCTGCTTCTTGCCttttgttttatagattttCCCCATTGATACTGATCTGAATAGTATTTGTTAcattgacagaaaaaaaaaatacatttccactgTAATTTGCATCAAGGGAAATGTCGGTGTGGTTTGAAGTAATTTGAAATGTAGACATTTGTGCTGGATATTTGCATGTAACAATTTTCAAATAGCAAACAATGTTCAATGTTATTGGAATTGAATGACCTTCCAGATGTAGGAGCGTAGGCCAACCCACTTTACAGAGCATTTTcttgtaaaatataatcattattttactaaaaaaaaaaaaaagcttttagcAGATTAATTTTAGTTTCCCAGTAGTTCTGTAGTCTACCCTGCAGCTTCCCACCATAACACTATAACCATGTGAAATCTATTTCACATGCATTTTACTAGTCCAGTAAGCTTGCTTGTTTTTGCTGCTGTGTGTTCAATGTTGAGTTGATGCATCACTGATCTGATATAATTTGCTATTGTAGACACTGCAGTGAGGCAGACTTAACAGGGGGTCCATTGTTCAAACCAGTTTTGGAGTACAATAAGTAGCcagtaatattacatttcttactcTCTTGGTAAAAGAACATTTCACATGAGGTATGCTCCTCAGAACTAGTTCTCCAGATCGTGACAGACTACTTCTCTAAAGCACAGCAGTACACTTCAAATGGGTTTAACCAGTTTTGCTGCATGTGGCTAGTTTAGAGGAGGTGACTGCAGTGGCAGTGAAGGCTTAGGTGGCAGCCTTTTCCTGCATTCATTTGCCATGGTCTGCTACTGGAGCTGTTGTGTGAGGAAGGTATTCTGTTGAAAGAGGAAGAGTCTCTATACGGTGTGCAGAATCAATCtttcttgaaagaaaaacaaagccgAGGCATTAGTTCCAGATGAGTGGAGGCCCCTCCTTAGGGACCAATAGGTACATCTGCTTGACATGCGGAGAATTCCTGGGCTGAGCGTCTGCAGGAACATGGTCACTCTCAAGATGCGCTCCAAAACACAGGCTGCTCAGCCTGACCGCACACCTCCCACTTCACACGTGTTTTCAATGACGCAGAGAAAGGAAAACCGAGTGGATGGGAAGCTTGTGttttgtagattttatttttgaaaaatgctAGCAGTTGCATTTAGGAAGGAATAGTGTACATCCTATTCTACAATCTCCTCAAAGTTTCTGAAAAGATGTTTACTAAGCAATCACAGAGGTACCAAAATCTGTACCACCTCAGAATTACTATTTTCACACTGTGGGGAAATTTCAATTGCATTACGCACACAACCATCTTGTGCTTTTGCTGCTAGTGTTTGGATCAGCCATCTTTCCAATTCAAAAATCAGTTTTGAACAGTACAGGCATCTACATATTCCTTCACCTATTCCTCTTTGTAGATGAATAACCTGCAAGGATTAAAGAGTAAATATGACGTGCAAACTAGATTTGTTGCACTATTATCTGTAGTCATTTACTGAAGTCTCGGAGGAAGGCACGCAGTGGCCGAGGCATTTCCTTGAACTTGGGCAGGGAGGGGATGGAAGTCCCCTGAAGTTGAATTGCGGTTTCGATCAGGAAGATTTGACCACAGGATTAACTCTCCGCTCTGTGCTCAATAGCTTGGCCCAGACCAGGATGATTGCATGCCTACTCAGTGCAATATCTTGGTCTTTCTGGAATTTGAGTAGCTGGGTGAATTAGAAATATTAAGCGAAAACGTAGGTGggacatttctattttaaatctACAACAGTCAGATTGTGCTCATTTGGACTTGAGGCAGCAAAACCCATAGGAAGTTTAGTGTGTTTTTCGGAGTGACTCCAGATCCTCAATAGAATCTCTGAACTACAGGATGTTGGCAGAAGGAGTATCCAAGTCCTCGGTTTCATTCATGTTTGCCTTTGTTCCCCGTGACTGACATCTGCTTATGTTTGTCTCCTCCCGTTTTATCCTggccctctttctccctctgtttGTGTTGCTGCTTCCAGTGTCTATcgctccccctcctccccctatGCCTCAACTGACTCCACAGATACCTCTCACAGGCTTTGTGGCCAGGGTGCAGGAAAACATTGCGGAcagccccaccccccctcctccacctcctcctgaTGACATCCCAATGTTCGATGActccccgcccccccctccacccccgcCCGTCGACTACGAGGATGAGGAGGCGGCCGTGGTGCAGTACAGCGATCCCTACGCAGATGGAGACCCTAACTGGGCCCCCAAGACCTATATTGAGAAAGTTGTTGCAATTTATGACTACGCAAAGGACAAAGATGACGAGCTGTCCTTCATGGAAGGTGCAATTATCTACATCATCAAGAAGAATGACGACGGCTGGTATGAAGGTGTCTGCAATGGAGTAACCGGCCTCTTTCCTGGAAATTATGTGGAATCCATCATGCACTATGCTGATTAAGATAGAGGGGACCTGTATTTATTCAGTCATAtctagacaaaaaaaaaagtgaattgaaCTTCAAAGCAGTTAAGTGCATTAGGATATGACAGAATGTTTGTTCcttttcaaattacaaataaaaatatctatttactatgtaacttttttttgttgttgggg

Function

symbol description
abi1a Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI1 (abl interactor 1).

NR:

description
abl interactor 1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019237 True 3982 mRNA 0.44 4 9873585 9884570

Neighbor

gene id symbol gene type direction distance location
AMCG00019221 LOC107687524 coding upstream 49169 9813390 ~ 9824416 (+)
AMCG00019222 NA coding upstream 80991 9788361 ~ 9792594 (+)
AMCG00019227 NA coding upstream 127948 9732190 ~ 9745637 (+)
AMCG00019219 mkx,LOC107665863,LOC103377095,LOC106578547 coding upstream 158964 9677660 ~ 9714621 (+)
AMCG00019218 armc4 coding upstream 209699 9654326 ~ 9663886 (+)
AMCG00019236 NA coding downstream 9291 9893861 ~ 9905733 (+)
AMCG00019234 NA coding downstream 55256 9939826 ~ 9947046 (+)
AMCG00019235 NA coding downstream 386049 10270619 ~ 10279108 (+)
AMCG00019238 NA coding downstream 398419 10282989 ~ 10304824 (+)
AMCG00019242 arhgap21 coding downstream 446545 10331115 ~ 10403491 (+)
G32418 NA non-coding upstream 60948 9809884 ~ 9812637 (+)
G32321 LOC103376870 non-coding upstream 123315 9693269 ~ 9750270 (+)
G32325 NA non-coding upstream 146832 9719039 ~ 9726753 (+)
G32324 NA non-coding upstream 155021 9718022 ~ 9718564 (+)
G32290 NA non-coding upstream 520930 9349849 ~ 9352655 (+)
G32437 apbb1ip non-coding downstream 32750 9917320 ~ 9920036 (+)
G32490 NA non-coding downstream 224336 10108906 ~ 10109150 (+)
G32549 LOC103376870 non-coding downstream 578593 10463163 ~ 10508063 (+)
G32671 NA non-coding downstream 1493386 11377956 ~ 11448251 (+)
G32674 NA non-coding downstream 1747788 11632358 ~ 11637880 (+)
G32293 armc4 other upstream 244923 9369898 ~ 9628662 (+)
G32286 NA other upstream 334374 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 524766 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 1488993 8345455 ~ 8384592 (+)
G32005 NA other upstream 2452502 7420501 ~ 7421083 (+)
G32539 NA other downstream 520069 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 4554683 14439253 ~ 14486706 (+)
G33283 NA other downstream 5279778 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 5670249 15554819 ~ 15626955 (+)
G33406 NA other downstream 6159372 16043942 ~ 16081943 (+)

Expression


Co-expression Network