AMCG00019242 (arhgap21)


Basic Information

Item Value
gene id AMCG00019242
gene name arhgap21
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10331115 ~ 10403491 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019242
ATGGCTCACCTCAGAGTGTTAGACTGCATGATCAACCACAACTGGAGTTTGATCTGCAACCTGTACTGCGCCTGGAGCACGCAGGGCACCCTAGCCCGGTCTTTGTTAGGCCCTGTGGCCAGGCGCCTTGGGAGTCTAGTGCTCACAAGGATTAAAGACAGGCTGTGGATAATGTCGGATACCGTGCTGAGTACTCTAGATTTTCCTGCCCTGTTGAAGGGGGCCAAACAGAAGGATGTACGGGAGCAGAGCGAGACCGCTTCCCCCGGTGAGGAGGAGCCCTTCTCTTGGCCTGGCCCGAAGACCCTCCGCCTGCGCAGGACCTCCCAGGGCTTTGGCTTCACGCTGCGCCACTTCATCGTCTACCCTCCCGAGTCGGCCGTCCACTCCTCTCTGAAGGATGAAGACCATGGCAACAGAGGGAGACAGCGGAACAGGCTGGAGCCCATGGACACCATCTTTGTGAAACAGGTAAAGGAAGGAGGCCCTGCCCATGGAGCTGGACTCTGCACAGgtgACAGAATTGTTAAAGTAAATGGAGAAAGTATCATTGGAAAGACTTATTCCCAAGTAATAGCTTTGATTCAGAACAGgagagagaggagagagagagtgctggaGAGGGATAGTGAGAGTGGGTACCCTTGCTGTGGATGGAAGGGAAGCTATGGAAATGACATCCACAGAGCAGTGCAGAGCTTGCTCTCGGAGGAAGCCTCTTACGAAGGTGCTGGGTTTTCTAATGGTTTGGGAAACCGGGAGAAGCAGGAGGGAGGAATAATGCATATTCTCAAGATGCATACCTTAAAGGCAATGAAGCGTACAGTGGAAATGCCCAAAACATCCCGGAACCTCCTCCTATATGTTACCCTCGAATAGACGGCAAACCCCCAGCAATGGCTCAGACCCCTGATACATCCCCTTTGGTCGAGGTGGGCCATGGCGTTCCACAGCCTGGCAGTGGCAGGGGGGCCTGGCCAGGGACCTCAGGGGGTTTGCAGCCTGACCATGGATACCGTCGAGAGATCCCTGTACCCCCCTCGCCCCCACAAGTGCCCAAGACCCagacagtagtgtgtgtgtgcaacgAGACTGTCAGGACTGTTGTTGTGCCCTCTGATGCCATAGAGAGGGGGGGGCGGGCGAGCCGAGCTGGCCCCACTCACAGAACGGAGGAGAACAGGTATGGACCCGTGGCTGCAGAACCTGCTGCTGTTAAAAGTAGGAGCAGACCCTCTGTTGTGACATCACCCACAGGTGGACAGCAGCAGTACCTTCCAGCAAGGCCAGCAGACACCCCTCCATTCCCTTCAGCTGGCAGGCCTCTTAATTACACGAGTTCTCCCGATGGTCTCCCTGTCAGACCCTCACTAACGGTGGCTGGTGATCCTTTCCCTGCGGCACCCAATCACtattctccctcttcctcctcctcctcctctacctCCCCTGCACCCCATCAGAACATTGACTGGCGGAACTACAAAACCTACAAGGAGTACATTGACAATAAACGATTGCACATGTATGGCTGCCGAACCATTCAGGAAAGGTTAGACAGCCTACGGGCCGCCTCCCAGAACTCCACCGATTACAAGCAGACGTCTCCCTCTGGGGCCCGGGGTCCGGGGTGTTCACAAGTTCGTCGAAGGAGCACGTCGCATGACCGGGCGTATCAGAACTCTGTGGGGATGCCCCTCCGCAGTGCCTCACAAGAGCGTCTTGGGGAGGCAGACCAGGCTGCACTCATGAAGGACTGGCCCCGCAGTGCATCCCAAGATGCTCTGACTTCATCGCCCTTGGGGGCCCAGAAACCACGAGCACGGTCCTGTGATTACTTGGGCAGGCAGGCCGAGACACCGCCTGGAGATGGCTTTGTTCCCGGAAGGCCTGTAGATAGGCGAGTTTATGGCAGGATTGAGGTGGAAGAAAGACCTTTACCTTACCATGATGGGGCCTGGCTGCCTAACAGGCAGTCCATCCCAGTATTGACTGTTCACCAGTCCCACAGAACTCCAAGTGGTTACAGCCCTGAGAGCCGCATGGGTTGTGGCAGTTTCCGTGGTATTCCTGCGGCCCCTCAGTTCCCAAAAGGTACAGAACCATTGCACATGTCTCGAGTTGAAAACCTGCCTCACGCTGTCCCCGTTTCTGTGGACAGACCCTCACGTGTGACAGAGAAAAACTCTGTGGTGGACCCTTCGTATGTTGCATCACCTTTGACCTCCGGTGAGAGGTCCAGCAGCTCAGATGCACTGAGAGACCAAAGAGCAGTCATGAGTAACCACCTGCCCCACACTGTTCAGCACTTGCAGCCCCGGGTGAGAGCTGAGAGTCTGCAGGACCAAGGAAAGGAGCAGGGGATCAACACCAGGTCTTCCTCTTGCTCCTCAGTTTCCTTTAAGACCGCGGCACAGCTGCCAGCCAGCAAGAGCACTCAGAAACAGCAGAGCCCAGCTACCTCCTCCAGCAACGGCACAGCGTCCTTCAGAGGGAAGAGCAGGGAGTCCTCAGGGAAGGTCAACGGGAAGGAACCCACGCAGAGCGAAGGCACTGATGCAGCAGGAGTCCAGACCGTGGTACTGAGAGAGAAGCCCCCCTCGGGGAGGCCCACTCCTCAGCCCCTGCGGCACCCGTCTTACATCCTGGCAGTGAACGAGCCCGAGAGCGAGCCTGTACCCGATTCCACCTGCTGGCTGCCCAACGATGCCCGACGGGAGGTCAACATCATGCGTCTCGGGGAGCACCGCAGAGATTCGTGCTCCAGCCCTCACGACGACTCCCTGGCTTCCATCCCCTTCATAGATGAGCCCTCTAGCCCAAGCGTTGACCATGACGTTACACACATTCCAGCTTCTGCTGTGATTTCTGTCGCACCAGCCATAGCTACAATCCCCCCCAGCCCAACCTCCCCATCTCCTGTCATTCGGCGCCAGCTGTCCCATGACCAAGATTCTCTAAGAATAAGTATTCTGGAATCACAGTCTGCTTCCAAAACCGAACGGTCAAAGTCATATGATGAAGGACTGGATAATTACAGAGAAGAAGGAATATCAAGGTCATCCATTAAACATGTGTCCAGTCTGAAGGGACTGAAAAAGGCTGTTGATGGTCAAAAGTCTTCTGAAGATTCGGGATCCAGGAGAGACTCGTCCTCCGATGTTTTCAGCGATGCCACGAAAGAGGGATGGCTTCATTTCCGGCAGCTCTCCACTGACAAGAGCAAGCGTGTGGGAGGTGGTATCCGTCCATGGAAGCAGATGTACGCGGTGCTGCGAGGCCACTCTCTGTGCCTCTACAAGGACAAGAAGGACGGGCTGGCCCATGGCTCGGCCCAGTCCGAGgatgagcagcagcagccgaTCAGCATCAAGGCCTGCCTCATCGACATCTCCTACAGCGACACCAAACGCAAGAACGTGCTCCGGCTCACCACCTCTGACTGCGAATACCTCTTCCAGGCTGAGGACAGGGAGGACATGCTGTCCTGGATCAGGGTGATTCAGGAGAACAGCAACTTGGACGAAGAGaacgCGGGTGTTACGAGCAGAGACCTAATAAGCAGGAAGATCAAGGAGTACAACACCATGATGAGCTCCCCGAGCGGCAAAACGGAGCCGTCTCCGAAGCCCTCCCGCCAGTCCCTCAGCATTCGACAAACCTTCCTGGGAGGGAAGGGGGAGCAGAAAGCCCTGAGTCCTCACTCTCCAAAGCAGGAGTCGGAAAGAAAAACTCCCCATAAAGACGATACTAGTCCACCAAAGGATAAAGGCCCTTGGCGGAAAGGCATTCCAGGGTTCAGGAAACCCTTCGAGAAGAAGCCCTCTCCGGGGGTGACTTTTGGGGTCCGGCTGGATGACTGCCCTCCGGCTCAGACGAACAGAtttgtgCCCTTGATCGTGGAGATCTGCTGTAAGCTGGTGGAGGAGAGAGGTCTGGAATACACCGGCATCTACAGGGTCCCGGGGAACAACGCTGCCATTTCCAACATGCAGGAGGAGCTAAACAACAAGGGGATGAATGACATTGATGTCCAGGATGACAAATGGCGGGATCTTAATGTGATCAGCAGCTTGTTAAAATCTTTCTTCAGAAAACTTCCAGAACCTCTCTTCACAAATGaaaaatatggTGATTTTATTGATGCCAACAGAACTGAAGATGCAGTGGAAAGATTAAAAATACTCAAAAGACTGCTTCATGAGCTACCCGAGCATCATTTTGAAACCCTGAAGTTCCTCTCTGCACATCTCAAGACCGTGGCTGATAACTCTGAAAAAAATAAGATGGAGCCCCGCAATCTGGCCATCGTGTTCGGACCCACCCTGGTCAGGACGTCCGAGGACAACATGACGCACATGGTGACGCACATGCCAGACCAGTACAAAATCGTAGAGACCCTGATACAACACTATGATTGGTTCTTCACAGAAGAAGGCAACGAAGACCCCCTGACCCCAGTGCGTCAGGTGAACGCAGTTGAGTCCCAGCCAGTACCAAACATAGATCATTTGCTCACCAACATCGGGAGGACTGGCACTTCTCCTGGAGATGTATCAGATTCAACCAATAGTGATTCTGCCAAATCTAAGGGTTCTTGGGGATCTGGAAAGGATCAATACAGCAGAGAGCTGCTAGTATCCTCCATCTTTGCTGCTGCAAGCCGTAAACGAAAGAAACCGAAGGAGAAGCCGCAGCCGAGCAGCTCTGAAGACGAACTGGACGCGGTCTTCCTGAAGAAAGATCTGAACCATGAGGCGAAGTGGCCTCCGGACGGCAAAGGGGAGGTGGAGAAAGAGACCGACCAAAAAGTGTGGTTAAGGGATAGTCAGGAGGGTAAAAAGGACAAGAGTAAGAGCTTTGACTTGACTAAGGCCAGAAAGGATCACAGGAATTCAGTTTTCCTGAAGGAGAGGGTATCCTCTGCACAGCCTTCCCCTACCCCTTCACCAAGCCCAAAGCGCACGAGCTCGCCGAGCCTCAGTTACCGCATGCAGCCGGCAGGAAAATCTTCCCTCTCCGACCCCCCGTCACAGTTTGATGATGCTGTGTCAGATTTAGGAACGATGAACAGCACAAGTTCTCAGACCTCCATGCACAGGACGTGCCACAAGAAATGGACGACCCCTGACATCAAAGGCAACGAGTCCGCAGCGGCAGAGGTCAGCTCCATCACCTCCGATTACTCCACCACCTCGTCTATGACTTACCTGACCGGCGTGGAGTCCAGCATGCTGAGCCCAGAGGTCCAGTCGGTCGCAGAAAGCAAAGGCGACGAGGCAGACGACGAACGCAGCGAACTGATCAGTGAGGGCCGGCCAATGGAGACAGACAGCGAGAGCGACTTCTCCGTCTTCGCCTCCAGTTCAGCGCCGGAGAGGACGCTGCGCGAGTGCCTCCAGGAAAAAACCCGGCAGAGTCGTAGAGGGTCCAACGGCAGCGAGTACATGGGCACCGAGGGGAGCAGCACACCCAAGCTCGAAGGCCGGCGCCTGTTCCCGTCTCACAAGCTGATCGAGTGCGACACGCTGTCGAGGAAGAAATCGTTGCGGCAGAAAACCGACAGCGAGTCTTCGGCCGAGGGACGCAGCGATAAAGAGTCAAACCGGTTTTCTCGGGTCTTGGAGGTCATGAAGAAAGGAAAATCGACGGGGAGCTTGAGCTCATCAACCAAGAGCGAGTCCGAGAAGCAAGAGCCGGCATGGAGGCTGAAGATCACCGAACGGTTAAAGTTTCGTCTGAAGACGTCCGCGGATGACATGTTTGGCGTTGGCTCCCAAAAAACCAGGTCTCCAGAGACGCGCAAGAAGAAGAACATCCGGCGCAGACACACCATGGGGGGACAGCGGGACTTTGCCGAGTTGGCCGTCATGAACGACTGGGAACGACAGCAGGCGCTGGGGGGGCCGCAGTCGGAGCTGTCTGCTGTGGACCGCCTGAAGCCCAAGTGCAACTCCCAGGACTTTTCCATCAGAGAATGGATTGCTCGAGAGCGTGGCCGAACTAGCAACCCCGAAGTGAACATAGACTCGGCCAAGGAGCCGCTGGCCACGGCCGCAGACAAAGGAGACAAGTCGGCATCATCTGTATCTGTTCAGCACGGTGCCGAGAGCTCCAGCAACCCCACCCCGATGAACAggccctccccctcggcctcgcCCGGTCCTCAGTCGGCGGAACAAGTGAACGGAGACAGCCTccagaacaagaacaaaacaaatctgagcCTGGCAGTGGACGCACACCCTCATAAACTGTCTGGCACCCAAGTTGTGAGGTCCAGATTCTATCAGTATCTGTAAAATGGcaaggtttgtgtgtgttgtgtgtgcgtgaaagtacatgcacatatatacatatgtacttatgtatgtgtgtgtgcatatatatatatatatatgtatacactggCAGTCAAAATTATTAGGAAAGCTGGAAAGTTCACTGAAATGTAACTATGAAAGGAATAAACGTCATTTCATATTAACTTATGTAAACATGAATTACTTCTTCAGCGGAAAACTCAAGAGGATGTGTCTAGCTGGCCCCTCTCTCCTGGATACTACCCCCCCCCTCTACATACGTGTGTTAGCCATCACAGCTGCACATGGACACTTTGGCACAAATTAAGTTGTGTATTGgcctttctatttttttgtgtgtatgtatgctgGTTGCACCCCCCCCCACGCACTTCAGTCAAACACAGCCCAGAACATTTGAGCAGCGTTAAGGTCAGGCGACTGGGGAGGTCAGTGCATGAATTTCAAAACCTGGAATTTCAAAGATGTAGTTTTAATCTGGCTTGTGTTTAGGGTCGTTACATCGTCAAGTCAAAACCTTCAGCCTCATCTTGTCTTCCTCAGTCATGTAGGATGCTGAATAGAATTGTATTGTTGCtttataaatgtgctgtttaCTGTTAGTGCACTGGGACATCAACCCGAACCCTCACATCACCACCTCCAGGGTTACTGTAGACACTGCAGACCGTATGACCATGTTTCATCGCACATAAGGTTTCTGCTTGAAGTGGAAGTTGTCTTCATCATTTTCTCACTCTTTCTAGTCTGTTGTCCATTCCGTGTGTACAGGTCCGTTTCTTCAACTGAAAACATCTGCTTGAGCTGCAGCTCTTCCCATCAGAACCACTTTCTTTCATGTAGCAAGATTCGGTGTGGGATTGAAATAAGTGTAAGGATAAGACATTGGCCATGAACTTTAAAGAAATCAGGCAACTCTTCgatcttatttttcttgtgaCACTTTTGTTTACTTGGCTACCAGCTTTCCTGTCTGTTAATGTGGTCTGTACTCTAACAGGCACAACATGGACTTCCCACAGCACCCCATACAATACCCTCCCGCCGATGACATTATGAGCATTAGATAGTGGAAGGAAAGATCGTTGGAGTCTTAACTAGTGCATCCTGTGTAGTGCGATTTAATGGAAGTAACGGATATAAAATGTCCTCAATGTATCcggttaattttttttttttgtgtgaataatAAACTTTTGTGTAAATTTATACATTATACTTTTCTTAGTGGATTTCAGTGAAATTGGCAAATATCCCCAcattgtgtgcctgtgtgtgtgtgtgtgtttgtttgtgtgtgtatatatatctatatatagatatgtagaCATAGTTAGTTACTGCACACTTTTCTTTAATGTTATAATGAACGTAACTGGATTAAATCCTGAATTTTCCTGTAACATCTCATTTGAATCGACGTGATTGTGTTTTCAGACAGATGTGAGATTGACCCAGTTTCTCTTAGTCAAACCCCAGTTCAACTGGAAGATAGCAAGGGCTTCAGTCATAGGGTATTTGTGTGTACATTTCTTACATTCATTACTTTCACAAACGTCGGTCATTCGAAATGACACTaaacaatacttaaagaaaattaaattgcagACTGTAAAGTCTTAAGTATTACTGAAGATTTTGTATGCTAATATATTATTGAAGTACTGCATTTTTtaggaagcaaaacaaatacgGTCCATTCTTCCGACAGTAACCCTATGAAGAATGTATATGCTTGCTATTGTATTGACTAAAGCTAGTTGCTTgtaataattcttatttttaaactgtaaatatgttTCTCTGTACttgaactgcattttatttttgttcagccTGCGTATGGGCTGGTTTCTGTGCTGGGTACTGTGGAAACTCTTTGCAGTGCATTGTAACAGCCAGACAGTCTGTGCtagtaatataaaaataatacatgtttttatatgactttaaatgacaaaatgagTACTGAACAACACTTCTGATGCAATATcctctgtattgtattgtggtTGTATTACCATTGCTTTGTCAGTTTCTGGCAtcagaatgcaaaaaaaagaagaaaaaaatcaaatcttAAATCATGTTTATTCACGAAAGAAAGTGCCTCATATTGAATTGGTTCTGGGTTAGTTAGGGTGCCATATTGtctttgttaaatatatgaaaatgtactgtGAATGATTGAATTTTATCTACAACccattaaataattttacagattccaaCACAGGCAGATTCCGAGCTTCCATTCTTTAGGCATTCCAGTTGGGTcttaaagtgttttatatcttcaaaattttaataccttttagtttctttctttttttttttttatgggacttgaattttaaatatttctgtaaaataagtaacttaaatgtgtatatatatatatatttcatgttaggcttttttttttattttcttcaaatgccAGATTTGATAAGTGTTGTAACATAGGCATGTAGATAGTGGACCCTGGCAAAACTGgtcagttgatttttttttttttttttt

Function

symbol description
arhgap21 Predicted to enable GTPase activator activity. Involved in several processes, including establishment of Golgi localization; maintenance of Golgi location; and organelle transport along microtubule. Located in several cellular components, including Golgi apparatus; actin cytoskeleton; and cell junction.

NR:

description
PREDICTED: rho GTPase-activating protein 21 isoform X3

GO: NA

KEGG:

id description
K20315 ARHGAP21_23; Rho GTPase-activating protein 21/23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019242 True 8846 mRNA 0.50 26 10331115 10403491

Neighbor

gene id symbol gene type direction distance location
AMCG00019238 NA coding upstream 26291 10282989 ~ 10304824 (+)
AMCG00019235 NA coding upstream 52007 10270619 ~ 10279108 (+)
AMCG00019234 NA coding upstream 384069 9939826 ~ 9947046 (+)
AMCG00019236 NA coding upstream 425382 9893861 ~ 9905733 (+)
AMCG00019237 abi1a coding upstream 446545 9873585 ~ 9884570 (+)
AMCG00019245 NA coding downstream 245088 10648579 ~ 10658798 (+)
AMCG00019248 NA coding downstream 297785 10701276 ~ 10709432 (+)
AMCG00019254 NA coding downstream 674480 11077971 ~ 11087695 (+)
AMCG00019255 NA coding downstream 864517 11268008 ~ 11280932 (+)
AMCG00019259 NA coding downstream 949728 11353219 ~ 11354106 (+)
G32490 NA non-coding upstream 221965 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 411079 9917320 ~ 9920036 (+)
G32418 NA non-coding upstream 518478 9809884 ~ 9812637 (+)
G32325 NA non-coding upstream 604362 9719039 ~ 9726753 (+)
G32324 NA non-coding upstream 612551 9718022 ~ 9718564 (+)
G32549 LOC103376870 non-coding downstream 59672 10463163 ~ 10508063 (+)
G32671 NA non-coding downstream 974465 11377956 ~ 11448251 (+)
G32674 NA non-coding downstream 1228867 11632358 ~ 11637880 (+)
G32778 NA non-coding downstream 1597472 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 2205910 12609401 ~ 12612533 (+)
G32293 armc4 other upstream 702453 9369898 ~ 9628662 (+)
G32286 NA other upstream 791904 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 982296 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 1946523 8345455 ~ 8384592 (+)
G32005 NA other upstream 2910032 7420501 ~ 7421083 (+)
G32539 NA other downstream 1148 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 4035762 14439253 ~ 14486706 (+)
G33283 NA other downstream 4760857 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 5151328 15554819 ~ 15626955 (+)
G33406 NA other downstream 5640451 16043942 ~ 16081943 (+)

Expression


Co-expression Network