AMCG00019248


Basic Information

Item Value
gene id AMCG00019248
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10701276 ~ 10709432 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019248
ATGAAAGATCTTCATTACCTAAACTCGGAGTCTGCCAAAACCGCAGGAAACCCGTGCCGAGACCATTGCACCTTGTGGATTTGCCGTCTGCTGTGGCCGGAGGAGAAGAACGGCGGCTTTGGAATACAGAACTCGCGAATCTACACCGCGGTCGTAGCGAGCAGGCGCGTCGTGCACCGAGATGAAAGCCAAGAAGGCGAGACGGAGGATGAAGACAGTATGGACGCTCCACTTGACTTGTCCTCAAGCACAGGAAGTGGCAAGAGAAAAAGGCGTGGAAATCTTCCCAAAGAATCAGTGCAAATCCTGAGAGACTGGCTTTATGAACACCGATATAATGCATATCCTTCAGAACAGGAGAAAGCACTTCTTTCCAAGCAAACTCATCTCTCAACACTACAAgtcTGTAACTGGTTCATCAATGCCCGCCGAAGGCTCCTTCCAGAAATGTTACGGAAAGATGGAAAAGACCCCAACCAGTTCACCATCTCGCGAAGAGGGAGTAAGATTTGTGAGGCAAATCTCACAGAAGGCTCCCCAGTCCCCAAGTCTCACGTTTCAGAAAACTCAGACAAGAGGTCTCTCCACCCTTCGAGCTTGGAACCGGGCCTGCCGAGGAAACCTGTGTCACCAAAGACGCCCGCTTCAGGGCCGGTGCTCCCCAGGCCGTCAGTAATATGTCACACTACCATCACCGCAATGCAGGGCAGTCCTCTGCACTACTGTCAAACCATCACCATGGACAAAGACATGGATCTGCATTCCTCAGTGGCTCCCAGTCTGTACAAATGTCAGGATGAAGCGGCAACAGAAGGTAACTCAAGCCCTCAGAGTGGGCTGTTCAACActcctccccccaccccgccaGACCTCACACAGGACTTCAGCGGATTTCAGCTCCTGGTGGATGTTGCACTGAAACGGGCCGCGGAGATGGAACTGCAGGCCAAAAAACTTGTTTCTTAAACAACTGGATTGTCCAAAACGACTTAACTGCTGAATGACCACGCTaagtaagaaaagaaaagcctgatcatttatattttctggTGGATAAATCAAATGCTATGGTAAGGACTTAATGAACATGTGTTGTGGTGCcttgtttaaattttttttttttttttgcacaccGAGGACCAAAAAACAAGGCTGGCTGCAACTTTCTCAAAGGTTCCTTTTAAAGAGGAATTTATTGGCTACTTTAGGTAGAGTTTGCTTATTGTTTCTTATAAAATCAAGACTCGGTTGGgttcttcattttcagttttcttttttttaaccagtttgAAAAATGTCTGCCTTGTTCATTTGCACATTAGGGACCAAAAACGGTCATCTGtcttaatgtacattttctttttggcaTAAACAATGAGCTTAATCACTACTGTAGTCAAAGAGGTTCTTTTGTTTcatgttaaacattttgtttttgtttttttaagtttggaaAGTGAAAGGTCatttttgttcaattatttgattttcatattgaCATGAGGGGCATTTAAAATTGGTTATGTAGCAATTTCACATCTGTCTGAGCCTTCTTACTGAGTAGAAGTGGCTAGTAAGTTTGCCAATAGAAAAAGTCCCCAGAAGGTGCCTTAGATCAGGTTAATGACACCTTTATTGTATGCCATAAGGagcaaactggaaaaataacactaaatatGTTGGTTAGGGTAAGTGAtgatatatctgtatatatcactgagaaaatgtcattacattgttttgaagCAAACTGAATTATAGAATGCTGTGTATAAATAATGTGAGGAGATGCCCAATGATGTGATTTCTTACTTTCATACTGTGCAATGTCTGTGGCAAACTTCGGTCACAtgctgtttaaataaagt

Function

GO:

id name namespace
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0072091 regulation of stem cell proliferation biological_process
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0048854 brain morphogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K19383 TGIF1; homeobox protein TGIF1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019248 True 1868 mRNA 0.43 4 10701276 10709432

Neighbor

gene id symbol gene type direction distance location
AMCG00019245 NA coding upstream 42478 10648579 ~ 10658798 (+)
AMCG00019242 arhgap21 coding upstream 297785 10331115 ~ 10403491 (+)
AMCG00019238 NA coding upstream 396452 10282989 ~ 10304824 (+)
AMCG00019235 NA coding upstream 422168 10270619 ~ 10279108 (+)
AMCG00019234 NA coding upstream 754230 9939826 ~ 9947046 (+)
AMCG00019254 NA coding downstream 368539 11077971 ~ 11087695 (+)
AMCG00019255 NA coding downstream 558576 11268008 ~ 11280932 (+)
AMCG00019259 NA coding downstream 643787 11353219 ~ 11354106 (+)
AMCG00019261 NA coding downstream 762690 11472122 ~ 11477288 (+)
AMCG00019262 LOC106929367 coding downstream 815767 11525199 ~ 11535371 (+)
G32549 LOC103376870 non-coding upstream 193213 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 592126 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 781240 9917320 ~ 9920036 (+)
G32418 NA non-coding upstream 888639 9809884 ~ 9812637 (+)
G32325 NA non-coding upstream 974523 9719039 ~ 9726753 (+)
G32671 NA non-coding downstream 668524 11377956 ~ 11448251 (+)
G32674 NA non-coding downstream 922926 11632358 ~ 11637880 (+)
G32778 NA non-coding downstream 1291531 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 1899969 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 1903853 12613285 ~ 12613926 (+)
G32539 NA other upstream 291779 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 1072614 9369898 ~ 9628662 (+)
G32286 NA other upstream 1162065 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 1352457 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 2316684 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 3729821 14439253 ~ 14486706 (+)
G33283 NA other downstream 4454916 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 4845387 15554819 ~ 15626955 (+)
G33406 NA other downstream 5334510 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 6739888 17449320 ~ 17452659 (+)

Expression


Co-expression Network