AMCG00019255


Basic Information

Item Value
gene id AMCG00019255
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11268008 ~ 11280932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019255
GTCTTTCACAGGAAGGTGCTCTACCAGGGGATTAGCAGAATGATTTCCCAGGACTCTCTGCACCCACCTTCCATCAACCGGTCTATATCACAGGACTCCCTGGACAGCAACTCGATGGAGGATTACTGGAGTGAAGTCAAGAGCATTGAGGAGAACTGTGAAGATGGGCAGGAGGAAATgctggaggccaagtcaactgATGAGGgggagctgcaggaggcctgGCTGCAGGAAGCCGGGCTGTCCACGCTAGTGTCAGGGTCGCCAGGTGATGGACCAGCCGAGGCCATCTTCTCCACGCTCACTCGCGCTCAGGCCGCCACTGTGAAGAAGCGCATTGACAACTACACACAGACCATGCGCAAGAAGAACAAGCAGTCCGTTCGGGATGTCCGGGATATCTTTGCAAGTGGCGACACACCGCCTGTATTCTGTCCTGAACCCGTTTTGCCAAGTCCTTCCAACAGCATCGCCCATCCAGCCAAGCTGCCTTTCCGCACACCAGGAAGAGTGGAAAACTGTGTGTCAGAATGTCAGATGGGCAGAGAGCGACCGGCGCTGGTGGAGGAGCTGAACTTCAACGTGCCCTACTCGGAGGCTACCGCCTGCCGACGGAGAGAACGAGACGCCAAGCAATtcctgaaaataaagaaagatgaTGCAGCACTGCCTaaatttaACATTCTTCCCACTAAAATGGGACGGACTAGGGTCGGAGATCTGTCACCAGAAGATATGAAGAAGATTGGTTATATCTCCCTTATTGAGTTAACTGCTTATTATGACGCCCTTGGAATTGAGCTGAAAAGAAACCGAACAGTGCGGAATAAAGTACGAGAAAGTGGTCTCTTTGGGGTTCCCCTCACAACGCTGCTAGAAAATGACCAAAAAAAGGCCCCTGGATCCAAAGTCCCTCTTGTCTTCAGAAAGCTGCTGGCAAAGCTGGAGCAGACAGGACTGCAGACAGAGGGAATTCTCCGGGTGCCCGGATCGGCATCGAGGGTCAAGCAACTCCGTCAGGAACTGGAAGCAAAGTTTTATGAAGACACGTTTGACTGGGATCAAGTGAGACACAACGACGCTGCTGGCCTGCTGAAAATGTTTATCAGAGAGCTCCCACATCCTCTGTTAACTATGCAACACCTCCCGGCTTTTGCTGCAGTAGAAAatatctctccATCCAAGATGCAGCTTCAAGCCTTACACCTCCTTATCATGTTGCTGCCTGAGCCTAACAGAGACACACTTAAGGCGCTGTTGGAGTTCCTCATAAAAGTGGTGGCCAATGAGGAGAAGAACAGGATGAGCTTGTGGAACGTGTCTATGATTGTGGCTCCTAACCTGTTCATGTGCAGAGGCAAGACCGCCAAGCCACAGGAGATGCAGGGGGCTGCCGGTGCTGCCCATCTGGTGCGACTCCTCATTAAGTACCAGGACCTGCTCTGGATTGTCCCCTGTTTTATGATCTCTCAGGTGAGAAAAATGAATGACGCTGCCGTGAACAAGAAGCACCAGGGCTCGGACAAAAATAAACGGAAACTCCTGAGAAGGTGGAATGCAGAACGAGAGAAATCAGAGAGAAATGAGCTCTCTGACATCCGTGAGGGAGTGATACGGGTTCACGCTCCGCTGCACGCCAAGGTTTCCATGGCGATCTTGCTCGACAGCGAGACGAAAGCGAGGGATGTCATGGCTCGCTTTGAGTGTGATAATAGTAATGCCTCCCGCAGCTCCATCAGATGGCAGAAACAGTATCTTTATGAAGTGGGTGGGAATATAGGAGAGCGATGTTTGGACCCTGAGGCCTACCTTCTAGACTTACACAGAGTGAATCCCAACTGTGAATGGGTTTTTAAACCAAGAACATGAACCTCCAGAAAGGACAAGGCAGACTGGATACTTGCCCatactgccccctgctggatATACCTACACATTGACTTGCTGGTGGCTTTGAGGAAGGAAGCACAGTTCATCAGATGTTTGCCGAGTTGACCACTGTGATCCACCTGTTCACAGACCCCTCAATGCCATAGACAGGTGGGTCTGCAACCACTTAGTATTTGAAGAACCTGTGGCACTGACTTGTGATTCGCTTTACTTTGAGCCTTATCCAGAAGACAAGTATTTAAAGGGTGCCACCACTTGTAAGCCTTTGGATTTAAAAAAGGGCTTGAATTCAGCCTCCTTGGTAgggaggatttatttttatttttatttttatcaggaTGAATCGTACAATTCTATCGCCAACAAAACCTGCAGAACTGTCCATCAGGTTTGGTTTGTGCCAAACTCAAAAGCCAAACCTGCTTGAGATTTCCTCTGGATAACAAGGGACTCCTGGGGCCGCGCTCACATAGAACCTCTCCCGCTCGAAACGCAGATgaagtacaaatgtaaaaatgtacatacaatatttatacCACTAATTTATcccactttttatattttatcatgAGCTGCAAGtcctaagatttttttttaaagcatgtttaTTGTAAATACCATTCAAAGGGATTTGCAGACAATTGTGAAGCAGTTACTGACGTGGATTTTAGACTTGCCTCAAAGGATGCCCAGTGGTAACGGCTGTTTCTGGCTCACCGGTCTATGGAGCTCTAAACACAAtgttaacaaacacacaaagaagatGTCTTAATCAAACATTCGAGTGGCAACACTGACAGTAGTTTTGAGGACTTGTCTAAACATGACAGTTGTAAAGATGGAAGGAGCTGTGACTGACAGAAACATCTATGAAGGTAATTAGGTAAACAAATGCTTGAAATTAACTTCAAAGAAGAAAGTATAGAAACAAGTAGCCAGAATTAAGATTTTTAAGTGGTCAAAAACAGCCTTTAAGATGGGTatcatgtgtgagtgtgtttgagGATATGAAAGAATATATACACAACAGTTGTTGCTGACCTTGTGAGTGAGATTTGTGGTTTCTCTCTTGTCTGTCTTTTATAATCCTTGATAACCAACAGGCTGTCTGTAAAAGTACTGACATAGCATGTATTATTGCACTGCAGTGCTGCATTTGTCATTCTCAAATATCATGGAGCAGTTCCGTTAGCAATGTATGATGAACTCCAAGACGTCCGCTTTTATATTTTCCTGAAATGGAGTGGCTGGAAATGGAATTGGATTTGTTTGCTTCAGTCAAAGCCCGACTGTGAGAAGAGACCTACATGTTCTAAGTGCTATAGTGCAAACTTACAGGTCACATTTCTgtatgatgttttttgttttgtttttctcctgtaTGTTTGACACTGCCAGCAGTTATCTGTATCTTCTGTTTAGGCATAGTAGCCTTGATTTGTGTACACTACAACACTAAAGTACTGTGATGTTATGTTGCCGACTTGTCAAGGATTTGAAATGAATAGACCTGACATCAATGAACCAA

Function

GO: NA

KEGG:

id description
K20639 ARHGAP18_28_40; Rho GTPase-activating protein 18/28/40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019255 True 3418 mRNA 0.46 14 11268008 11280932

Neighbor

gene id symbol gene type direction distance location
AMCG00019254 NA coding upstream 180313 11077971 ~ 11087695 (+)
AMCG00019248 NA coding upstream 558576 10701276 ~ 10709432 (+)
AMCG00019245 NA coding upstream 609210 10648579 ~ 10658798 (+)
AMCG00019242 arhgap21 coding upstream 864517 10331115 ~ 10403491 (+)
AMCG00019238 NA coding upstream 963184 10282989 ~ 10304824 (+)
AMCG00019259 NA coding downstream 72287 11353219 ~ 11354106 (+)
AMCG00019261 NA coding downstream 191190 11472122 ~ 11477288 (+)
AMCG00019262 LOC106929367 coding downstream 244267 11525199 ~ 11535371 (+)
AMCG00019264 LOC108432749,LOC108271270,LOC106579657,LOC106590348 coding downstream 273288 11554220 ~ 11567397 (+)
AMCG00019263 LOC108432749 coding downstream 304861 11585793 ~ 11599813 (+)
G32549 LOC103376870 non-coding upstream 759945 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 1158858 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 1347972 9917320 ~ 9920036 (+)
G32418 NA non-coding upstream 1455371 9809884 ~ 9812637 (+)
G32325 NA non-coding upstream 1541255 9719039 ~ 9726753 (+)
G32671 NA non-coding downstream 97024 11377956 ~ 11448251 (+)
G32674 NA non-coding downstream 351426 11632358 ~ 11637880 (+)
G32778 NA non-coding downstream 720031 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 1328469 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 1332353 12613285 ~ 12613926 (+)
G32539 NA other upstream 858511 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 1639346 9369898 ~ 9628662 (+)
G32286 NA other upstream 1728797 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 1919189 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 2883416 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 3158321 14439253 ~ 14486706 (+)
G33283 NA other downstream 3883416 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 4273887 15554819 ~ 15626955 (+)
G33406 NA other downstream 4763010 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 6168388 17449320 ~ 17452659 (+)

Expression


Co-expression Network