AMCG00019256


Basic Information

Item Value
gene id AMCG00019256
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11283571 ~ 11328359 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019256
GCAGATTGCAGTCATACAGCAAATTTGCATAATCaccatttacataaatatatatggcGATAAATGAATGCGTTAAGAAACCAAAGGgcaatgaataatttatttagcgGTGATCTGATGTCTTTTTTATGATGTCATAGGTCTCTTCCCTGCGATTCTGAATCTGGCCAGCAATGCCGAGATCTCCACCAACGCGACGTGTGGGGAAGCCGGGCCCGAGATGTTCTGTAAACTGGTGGAGCACGTCCCCGGATGGCCAATCCGCAACCCACAGTGTCGAACCTGCGACGGGACGAGCGTCAACCCAAAAGAACAGCATCCCATCACTAATGCAATTGATGGGACCAACCGCTGGTGGCAGAGTCCCAGCATCAAGAACGGCAGACAGTACCACTGGGTGACGATAACTCTGGATTTACGACAGgtCTTCCAGGTTGCCTATATCATCATTAAGGCTGCCAACTCGCCTCGCCCTGGTAATTGGATTCTGGAGCGCTCTCTTGATGGAGAGACTTTCACGCCATGGCAGTACTATGCTATCAGTGACACAGAGTGCTTAACACGGTACAACATCACACCGAGGATCGGGCCCCCAACGTACAAATCCGACGAAGAAGTAATCTGCACCTCTTACTATTCCCGGCTGGTCCCCTTGGAGCACGGAGAGATCCACACATCCCTGATCAACGGCAGGCCGAGTGCCGATCTCTTGACCCCGGCCTTGCTGGACTTCACCTCGGCGCGCTTCATTCGCCTGCGCCTCCAGAGAATCCGTACCCTCAACGCTGACCTCATGACTCTCAGCTACCGGGACCCCAAAGATGTGGATCCGATAGTCACCCGTCGGTATTACTACTCCATCAAGGACATTTCTGTGGGAGGCATGTGTATCTGCTATGGCCACGCACAAAGCTGCCCATGGGATGAAGTAACAAAGaagctgcagtgtgtgtgtgaacacaATACATGTGGGGAGAGCTGTAATGAATGTTGCCCTGGCTACCATCAGAAACCCTGGCAACCTGGAACGATCTCTTATGGCAACACTTGTGAAAAATGCAATTGCCACAACAAGGCTGAAGATTGTTACTACAACCAGACAGTGGCAGACGCCCGGATGAGCATGAATATTCATGGTCAGCACGTTGGTGGAGGAGTTTGTATTAACTGCACTCAGAACACAGCTGGCATCAACTGTGAAACCTGTGCTGACAGCTACTTCAGACCACAAAGGgtTTCCCCCAATGATGAGAACCCTTGTGTGGAGTGTCAGTGCGATCCATCTGGCTCTCAAAGTTTGAACTGCATTAAGGATGAAAATCATGCTGATCCCCAAAATgGTTTACATCCAGGGCAATGTCACTGTAAAGAGGGCTACACTGGGGAGAAATGCGATCGCTGTGCATTTGGCTTCACAGACTATCCCTACTGTATCCACTGTAACTGTAGCCTGGTGGGCAGTGTTAATACAGACCCCTGTGCTGAGGAATGCATATGCAAGGAGAACGTCATGGGTACAAACTGTGACCTTTGTAAGCGAGGCTATTATAACCTCCAGGAGAGCAACCCCGAGGGCTGTACCGAGTGTTTCTGCTTCGGAGTGTCTGACGTGTGCGAGAGTATTTCTTGGCCTGTAACTCAGgTGGTAAATATCGATGGCTGGCTACTTCCTGTTCCTCAGGTCAAGGATAATTATATTACTGTTAACAACACAGCTGGAAACAGGGCATTCACGTCCCCCTACTCTTGGTCAGCTCCGGAGAAATTCTTGGGAAACAagctGACTGCTTATGGAGGGTTCCTGAGGTACAATGTTTCTTATGATGTTTCTCAAGAGAATTTGGACACCTACCTGATTGCTGATTTCAATGTCATTATTGAGGGAAATGGCAAGACTTTACAAATGGGGCACGGACACCAGCTGCTGTTGAAGCCCTATAAAGAGCGAAGTCTTGCGGTTGAAATTGTGCCGAGGAGCTTTATTGACCTCCACACCAGAAAACCGACCCAGCGAGATGAATTGATGACCGCTCTGGCCAACCTCACAGGGCTGCATATTAGAGTCTATTCCAACCGCACTGCTGATGCAGTTCTGAGGCAAGTTCaggtttcttttaaaaacatctaTAACATCAGAACTTTGCTGGGCTCTGTCTCTTTGGATACAGCAAATATTAATGCCATAGATTTGAAACCTGCAATGGACGTGGAGCATTGTGAATGCCCATGGGGTTACACTGGCACATCGTGTGAGTATTGCAGTTCTGGTTTTTATCGAGTTGGAGGAATTCTGTTTGGTGGCAATTGTCTACAGTGCGAATGTAACGACCACGACACAGAATGTGATGTCAATGGTGTCTGctatGATTGTAAGCACAACACCACAGGGCCTCATTGTGATCAGTGCCTTCCTGGTTTCTATGGTGATGCATCAGATGGCACCCCTGACGATTGCCAGACATGTGCCTGTCCTTTGAATATGCCATCTAACAATTTCAGCCCTACCTGTCATCTGGACAGTGCAAAGGAAGTGATGTGTGACCAGTGCCTGCCAGGGTATACGGGTTCCCGTTGTGAAAGGTGTGCAAATGGTTACTATGGAGAGCCGGCGGTGCCAGGAGAGCGCTGTGTTCTGTGTGATTGCAATGGCAATGTGGACCCACTGGAGCCCGGCCACTGCGACCCAAAGACAGGGGAGTGTCTGAAATGCATTGATAACACAGCGGGTAGCCACTGTGAGAAATGCAAAGAAGGCTATTTTGGTGATGCTGTTGTGGCCAAGAACTGCCAGGcttgtggctgccatgcaAACAGCTCGCTCTCCACGGTCTGTGATGTGGAGACGGGAGAGTGTCAGTGCAAACCAAACGTCATCGGAGAGAAGTGTGACCAGTGCAAGCCCGGTCACTTCGGCCTCAGCAGCGGTGCTGGCTGTGAGCTGTGCGCCTGCAACGAGGCCGGGTCGCTCTCTGCGGACTGCAGCGACGAAGGACGGTGCGTCTGCATCCCAGGAGTGACAGGGGACAGGTGTGACCGCTGCCAGCATGGCTTTTATGACTTCCAAGATGATGGGTGCAAAGAGTGTGATTGTGCCCACACCCACAACAACTGCAGCCCAGAGACGGGCGAATGCatctgccccccccacactaAAGGAGAGAAGTGTGAGCTCTGTGAACACAACTACTGGGGACATGACTCAGTGTCAGGATGCAAGCTGTGCAACTGTAGTGTCATCGGGTCGTCCAGTGCCCAGTGTGACCTGTCCAGTGGCCAGTGTCAGTGCACCCCTGGGTTCGGGGGACAGAAATGTGACCAGTGTGCCCTGGGGTTCAGAGCTTTTCCACAATGCGCCGCCTGCAATTGCAACATCAACGGCACAAGAGAGGAGTACTGTGATGAGAAGCTCGGCATCTGCGGCTGCGAGGAAGACTTGGGGAATTGTGTTTGCAAGGACAATGTGGGCGGAGCTGGCTGTGATGAATGCAAGCTTGGGACCTTTGGCCTGAGCGCGGACGAGCCGGCTGGCTGCAGTCCGTGTTTCTGCTTTGGCGTGTCCACAGACTGCGAGGAACTCGGGGGACTAGTCAGAATTCCTATCACAGTGTCTTCAGAGCCGGAGGTGCTGCGTGTCGTCAGTCAGAGTGACCTGACGGGCACTACGGAGGGGGTCTTCGTGCAGCCCCCTGACTTCCTGTTGGATGCCACCTTAGTCCAAAGCTCACTGACCGGCCCCTTCTACTGGAGGATGCCAAAACCATTCCAGGGCAGTAAGCTGATGGCCTATGGAGGGAAGCTCAGATATACGTCTGCCTTCTATGCCCTTGAGGGCTCTGGACTCTCCAACTACGAGCCCCAAGTCCTCATTAAAGGAGGACGCCAGAGAAAGCTGGTCATCTATAGAGACCTGCTGGTCCCTGACAATGGGGTGAAAATGAGCCAGGAGATTGACATGAAGGAGcACAAATGGAAGTACTTTAACTCTGTCTCTGAAAAGGCTGTGACACATTCTGACTTCATGTCTGTCCTGAGCAACATTGAATATATCATCATCAAAGCTTCATATGGCAGTGGGCTACAACAGAGCAGAATTTCTAATATCTCCATGGAGGTTGCGGTTGACTCTGATGACTTGAACACTGGCAGTGAAACAGCTGCGCGCTTCATTGAAATCTGTGAATGTCCATCAGGATACGCTGGACTATCCTGCCAGGAGTGTGCCCCTGGGTTTCACCGGCAGAAGGTGGCAGAGTTGAGTGTAAGAGGGCCACGCCCACTGATTGAGTCCTGTGTCCCATGCCAGTGCAATGGCCACAGCCAGGCCTGCGATCTGGACACGGGGAAATGTCAGGGCTGTCAACACAATACAGTGGGCGATCACTGTCACCTTTGTGCTCCAGGATATTATGGAAAAGTTAATGGCTCAATAAATGATTGCTCACTCTGTGCGTGTCCTCATGGCAACAAAAAAGGTTTCAGCCCCACATGTGTCCTGGAAGGTGCCAGTGACTTTCGCTGTAACGCTTGCATGCCAGGCTATGAAGGACAGTACTGTGAGAGGTGTTCTAAGGGTTACTATGGGAACCCAAAGCAGCCCGATGGTACATGTGAACTGTGCCAGTGCAATCCCACCGGCTCTGAACACGATCACTGCGACGAACTCAGCGGCCAGTGTGTGTGCAAGAAAGGCGTGCGTGGGCACCTGTGTGATGAGTGTGAGCCCAGACACGTCCTCGTGGGCACCGAGTGCATGTCCTGCAACGATAACTGCACAGGAGTCCTGCTAAATGACCTGGATGATCTGGAGCTCTCTCTGCAGTCTGTTAACTTGACAGGTGTTGTTGTAGCCCCATACAGCCTCCTGGCTTCACTCAAGAACACCACAGAGGAAATGAAGACACTCTTGTCCCCGCAGAAAAATACAAGTTATTTGGTACAGCAAATGGATAAGCAGTTTGCAGGACTTACCAAAGAGCTTGATCATCTTCATCAAAGGGTAATGGTTTTCCTCATTATTAAACATGATACTCTTGCAGATGTGGCTGGTAACTTGAATGAGTCTCTGGAGGTTGACCTGGATCTTACAAACAGCAGTCTGCTACTAGAGGATATGACCACactgttggaaaagatgagGAAGATTGACCTTACCCAGCAGAATCAAACTGCCACAGATGAGTTTGTAGCTGCACAGGCCCTTCTGCAGAGGGTTCGGGGGGATCTGGAGAAACCCCAGCAGGCCATTGAGGAGCTGAAGAAGATAGTCGGCAGCATGTTGTCAGAGAAGACAAACCGGCTGAGAGACACCAAGGACCTGGTGCACCTTGCGCAGACAAACACCAACAACACTAAACAGCTACTGCGCACCGTTTCCAAAAACTTGTCCGAATTTCAGATGTTGGAGCAAGATCGAGATGAGCTGGACCTCTGGAATCCCACACTGAGAAAACAAGTGGACAACCTTGTCATGCAGATGAAGAAGCGTGGAGCACTCGACCTGGTGTACAGATCCGAAGACCACGCCGACAGGCTGAGCAAATTGGCAGATTCACTCTATAGTGCTGTCTTGGAGGTGAGGAATGTTTCTATCAATGCCACGACTGCTGTTCAAGCGAACTCCAACATCAAGGAGAACATCGAGGAAGCGGAGAGGTTGTCAGAAGCTAATCTTACAGCTGGGGCTGCATTGAATTTGACACAGTCGTCTGATGAGCCTCTGAAGGAAGCCGGATCCCAGTCTCTGCAACGCAGCACCACGATTCTGTCAGAAGTTCACAACACGAGCAACAAGTCTGACAGTTTAATGGCGGAGCTAAGGGTGCTGAAGCAAAAAGTTGCCAAGATACAACAGAACACTCAACATATCAGTAACCAGCTGACTGAACCTTTGCAGCTGATGAGAAACTTGCCTAATGATACCAGTAAGAAACTCCTGGAAGCAAAAGCGCAAGCGATGGTAGCAGACACCTCCCTCAACACTGCCCTGAGACGCCTGGAAGACTTCAGCCAAAAACTAGAGGAGTCCTCATCAGCCGTGGCCAGAGCGAACAACACTGTCAGCAGCACCAACAAGCTGGTCACGGATTCAGAAAAGACAGCCCTTTTTTATCATTCACAGATTAAAGTGGCGGTGGCGGCCGATCGAGACTGTATTCGTGCATATAAACCACAGATCACCTCCAGCAACTTCAACACCCTCAAACTGACAGTGAAAACCACAGAGCCCGACAACCTGCTTTTCTATCTGGGCAGCAGCTCCAGCGTTGATTTCATGGCTCTGGAGATGCGACGAGGAAAAGTGTCTTTCCTCTGGGATGTTGGCACAGGACATACTAAACTGGAGTACCCCGACATTCAGATTGACAACAACAAGTGGTATGAAATCCACGCAACCAGATATGGAAAGCAAGGTTCACTGATAGTGCACGACCTGGAAATTGCAGAGAAGACCACCGTAACAAAAACGGCATCTTCCCCTGGAACGTCTACAGTGCTGGATGTGAATAAATCCACCCTCGTCTTTGTAGGAGGCCTTGGAGGTCAAATCAAGAAATCATCAGCTGTGAAAATGACCCACTTCAAAGGCTGCATGGGGCAAGCGACCTTGAATGGGGAGAATATTGGCCTGTGGAATTACGCCGAAAGAGAGGGCAGGTGTAAAGGCTGCTTCATGAGTCCCCAGGAAGAAGACACTTCCTTTCATTTTGATGGCAGCGGTTATTCCATTATTGAAAAGCCGCTTCGCTCCACAGTCACTCAAGTTGTGATGCTTTTCAAAACCTTCTCTCCAAATGGATTGCTCCTCTACCTCGCTTCCAATGGAACGagAGACTTTGTGTCCATTGAGCTGGTCGAGGGTAAAGTTCGCCTGACCTTTGAACTCGGGTCAGGACCTCTCACTCTCATCACAACAAAAGCATACAACAGTGGGAAATGGTATAAAATTGCCTTCCAGAGGAATAAACGAACAGGTTACCTCGCTGTGATGGAAGCCTACACCCCCACAAACAGAGAGACCATGGAAGGGGAGGCCCCCGGCACCGCCTCCGATCTCAACCGCTCAGACAGGGACCCCATTTATATAGGGGGGCTGCCCAGCTCCAGACCCATCCGGAGGCAAGTCATTACCAGGTCTTACGTTGGATGCATCAAAAATGTGGAGATTTCTCGGTCTAACTTTGACCTGCTAAGAGATGCCTACGGGGTCAGAAAAGGCTGCATGTTACAGCCCATCAGCAGCTTGACCGTCCTGAACGATGGTTTCCTCGAGCTCCCCCCCGTCACACTCACGCCTCAGTCCGAACTCCTGGCCACTTTCACCACCAAGAATGACACCGGCCTCATCCTGACGGGATTCACCAAAggagagaaaaggaagaaaaggcAGACCCAGCACCCCTTTTTCGCCATCATGCTGGTCAGCGGGCATCTGGAAGTCCACATGAACGCGGCTGATGGGGCGCACATTAAAAAAGCTGTGATCAAGTCGAAGACCGGCACCTTCAGTGACGGACAGGAACATTCGATCATCCTGCACCGCAGCAAGAGGATGGTGTTGGTGCAGGTGGACGAGGGCCGCCAGGAGGTCCTGCGTTTGGGCTCGATGGCGGAGAAGAGCTCGTTTGTCCTGTCCAAGCTGTACGTTGGGGGCGTCCCTCAAGGAGAGGGAGCGAGTCTCAAGACCACCCGGTCTTTCTACGGCTGCATCAAGAACCTGGCCTTCGACATGCAGCCGCTGACCCTGTCCTCCGCGGTGAGGTATCATAACGTGGACCTGGACAGCTGTCTGCTGGAGGAGAGGCCCAAGCCTGTGGTCCTTCCCGAGGAGGGCGAGCTCGAGGGGGAACCCCAGCCCTCGCCTCCCCCAGCCAGGCCTGTCGCGACCATCAGCACAGACCTGCACTCATTCACGCCAGGCACGGCTAAGtgtgcagcagAGGAGCTGCCAGGCCACGTCCCTGCAGCGCACCAGTTCGGCCTGTCGAGACACAGTCACATGGTGCTGCCCATCAGTCACCTCACAGTCAGGAAGAAGTTCACTATCCAGTTATCCCTGCGCACGTTTGCCTCCAGCGGCCTAGTTTACTACATGGCCAACGCCAACCAGATGGACTTTGCAGCCCTGCAGCTGCTTGAAGGTCGTTTGTTCTTCACCTGTGACCTGGGCAAGAGTGCGGCCGTGGCAAGTCTTCCTGATGTTGTCAGTGACGGCAAGTGGCACACAATTAAGACTGACTTTGCGAAAAAGATTGCCACAATTAGTATCGATGGGAAGGAGTCGGCCCCCGCAGAGGCAGTGGGAAACGGGAACACGCTGGATGTGGAAGGAAAGCTGTTCCTGGGAGGACTACCTCTGGACTATACGGCCAAGAATATTGGAAATGTGACACACAGCGTCCCAGGCTGTATTAACAGTGTGATGTTGAATAATAAACCTCTGGACAGAGACAGCCCGGTCTCCACTCACTCCGTTGACAAGTGTTACACGGCAGCTCAGGAAGGCACTTTCTTCAACGGGACTGGATTCGCTGCATTAGTAAAAGACGGGTACAAAGTGCGCTCCGACGTGGCGATCGCGCTCGAGTTCCGCACCACGGTGCAGGACGGGGTGCTGCTGGGCATCAGCAGCGCGAAGGTGGATGCGATTGGGCTGGAGCTGGTCGAGGGGAAGATCCTTTTCCATGTGAATAATGGCGCTGGACGAATATCTGCCATCTTCACCCCGAGAGGCACCCTCTGCGATGGGAAGTGGCACGTCCTGGTGGCGAACAACAAGAAGCACGGCCTCACTCTGACCGTGGATGGCGTGACCGTCCAGACCGCCAACCCGCACTCTCAGTCTACCTCTGCAGACACCAATGACCCCATTTATGTTGGAGGATTTCCTGCAAATGTGAAGCAGAACTGCCTCACGATTAACACTCCTTTCACCGGCTGTATGAAGAACCTCAGGCTAATCAAGGGACACGTCACCGAGGCCTACGACTTCAACACGTCTTTTGAGCTGCGCGGCGTCTTCCCACACTCCTGCCCAGGGCTTCAGCTCTGAAGGCGCAGGGCGGAAATATGAAGCCAGAGCCTTTCCACACTCCACTCAGGatattttatgtgtttctttaaaaaaaacattgtaaaacagAAGGTGTTTATTCTTGaagtattttaaatcattaccTCTACTAAAATGCTgattacatttagttaattttatACCAGACGGTACCTGTGCTTGACAGTATTCAGATTCTCCATTAAGAACCTTagaataatacatgtttttattttattaatcacaatAAACATTTCTCATCAAATA

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0001764 neuron migration biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process
GO:0050794 regulation of cellular process biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0030903 notochord development biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component

KEGG:

id description
K05637 LAMA1_2; laminin, alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019256 True 9316 mRNA 0.51 59 11283571 11328359

Neighbor

gene id symbol gene type direction distance location
AMCG00019258 NA coding downstream 87780 11177703 ~ 11195791 (-)
AMCG00019257 NA coding downstream 157854 11120227 ~ 11125717 (-)
AMCG00019253 NA coding downstream 180724 11101972 ~ 11102847 (-)
AMCG00019252 NA coding downstream 263668 10976788 ~ 11019903 (-)
AMCG00019251 NA coding downstream 312306 10970189 ~ 10971265 (-)
AMCG00019266 LOC106596660,LOC106569828,LOC100697261 coding upstream 429756 11758115 ~ 11774317 (-)
AMCG00019277 apcdd1,LOC107383547,LOC100712112 coding upstream 607745 11936104 ~ 11954459 (-)
AMCG00019278 NA coding upstream 724301 12052660 ~ 12053218 (-)
AMCG00019279 piezo2 coding upstream 750203 12078562 ~ 12138607 (-)
AMCG00019288 NA coding upstream 1114329 12442688 ~ 12445186 (-)
G32635 NA non-coding downstream 164064 11118708 ~ 11119507 (-)
G32587 NA non-coding downstream 314798 10968517 ~ 10968773 (-)
G32586 NA non-coding downstream 315168 10968129 ~ 10968403 (-)
G32351 NA non-coding downstream 1930919 9349849 ~ 9352652 (-)
G32144 NA non-coding downstream 2908167 8338036 ~ 8375404 (-)
G32693 NA non-coding upstream 268457 11596816 ~ 11600671 (-)
G32706 NA non-coding upstream 305150 11633509 ~ 11636317 (-)
G32773 NA non-coding upstream 602145 11930504 ~ 11979273 (-)
G32779 NA non-coding upstream 672591 12000950 ~ 12001165 (-)
G32784 NA non-coding upstream 731265 12059624 ~ 12060251 (-)
AMCG00019213 NA other downstream 1849457 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 2381693 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 4599270 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 6297187 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 6342904 4932349 ~ 4940667 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 523749 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 1084795 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 1840077 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 2333757 13662116 ~ 13665230 (-)
G33163 NA other upstream 3163532 14491891 ~ 14558290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023194 lama1 coding NC_007135.7 CM002908.2 41690545 ~ 41784173 (+)