AMCG00019260


Basic Information

Item Value
gene id AMCG00019260
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11669895 ~ 11697021 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019260
AGTTCTTTGAAGAGAAGAGGGAGTCGAGAAATGCACAAGGAAAAGAAGTCTATGGCTCAGGAGGATAGTGCGGACCTCAGATGTCAGCTCCAGTTTTCCAAAGAGGAGTCGGCCCTCATGCGTAAGAAGATGGCCAAGCTTGGTCGGGAGAaagatgagctggagcaggagctACAGAAGTACAAGTCCGTCTATGGGGATGTGGACAGCCCCTTACCCACTGGAGAGTGTGGTGGACCGCCAAGCACTAGGGAGGCCGAGCTCAAGTTGCGTCTCAAACTGGTGGAGGAGGAAGCTAACATCCTAGGCAGGAAAATCGTGGAGCTGGAAGTGGAGAACAGGGGGCTGAGAGCTGAGAATGAGGACATCCGTTGTCAGTACGAGAAGGACTGCTTGGGGAGGGAGCATATCTCCAGTGTGCCCACGTCTCCTTACGGGGATTCCCTGGAGTCGGCTGCAGAGCTACGACGCCACCTGCAGTTTGTGGAGGAAGAGGCAGAGTTGCTGCGGCGATCTATCTCTGAGATAGAGGATCACAATAAGCAGCTAACCAGTGAGCTGAACCGGTTCAAGTTTGGACCAAGCCAGGAAGCTTGTTGGGTTGAGGAAGATGGGGTGTCCAAGCCTGGTAGTGGCAACAGTGGGTTTCCTCCCAGTGGGGGAGGATTACTGCAGGAGGAGCTGAAAGCGGCACGGATGCAAATTAATGAGCTGAGCGGAAAGGTGATGAAACTTCAGTACGAGAACCGTGTCCTAATCTCGAACGTGCAGCGTTATGATTTGGCGTCCCATCTTGGCTTGCGCACAGCTAGCCCACGGGACAGCGACGCTGAGAGTGACGCAGGCAAGAAAGAATGTGAAGATGAGGACGCCGGCAGGATGTTGCCTTTGCAGCCGAAAAGAGAAGGCCCAGTTGGTGGGGAGAGTGATTCTGAGGATCTCTTTGAGAAGACCTCTGGGTTTGGCAGTGGGAAACCCTCGGAGGTGAGTGATCTCACCCCAGTGGGACTGGCCCAGCGGAAAAAGGCAGACACTGAGACTGTAGCCAATGTGAAGCGTGAGGCAGAGCGGCTAGGGAAGACGGTGGACTGCCTCATCACGGACACCGACAGCTTGATCTACGATGCTAAGCTTCTGGTGACAGGTGGGTCAGCTCTTCAGGAGGAATTCAAAGGAGATGGTGATGTGGCAGAGGGCAAGGCAGAGCCTCAGCTCCTGGATGCCATCAACACCCGCATGAAGGCCTTCAGGACAGAGCTGCATACCTTCATGGAGAAAGTGGACCACCTTGGCGAAGGCCTCAGGGATCAGGTGGATGACCTCTCCCCTATGCCAAACCTCACCGAGTCAACGAGTTTTCTGTCTGGAGTCACCTCCATGTCACGGGACTCGCCCATTGGGACCCTAGGGAAGGACCTCATCACAGACTTCCAGtccAAACTGAGGGATCAGACGGAGTGGCATCTAGCACAGGAGCTTGAAGTGGAGCCAGAGACCCACAGCGGTCATCTGGGTGCAGACCAAAGCAGGAGAACCGATGGAGACAATAAGTACTACAGGCCAGAGTGTTTAAATATAGAGCTCAGGGACGCCCCTGTTTTACCAGAGGCTAGCACTCCAGTGAGGGAGTTACAGGTCCGCCTGGAGCACGAGAGGAGACTGCGGCAGGAGGAGCAGGACAGCTATGCCAGCCGGATCATGCAGCTGGAAGAGGAGCATCGGAAAGCTCTGCTGCGGAAGGACATGGAGGTCCAGAGCCTCAGCCTTCAGGGCAAACTGCAGGAGAAATCATGGGCTCAAGAGAAGGGCCTTCTGCTGGAGGAAGTGAAGCTCTTCCGCCAGAACACCTTCATGTTCTACATCAAGCTCAAGTGGTTGCTGAAGCACTGGAGACAGGCCAAGAAGATagacgaggacgaggaggaggatcTCATGGAATATGAGAAGATCGACAGCATGCCGGAGCTGAACCTCCTGTTGGACGAGGCAGAATGTGAGGCCGAGGGACCGGAGGGGGAGTATTTCCCGCACAGTTCGGAGGAGGGCAGGGCTCAGAGTCCCCCCCTGCAGACTCCAGAACTGCTTCAGCAACAGAAACAGGTTGGCGAGAACAAGAAGGCACTGCAGGCTTTGAGGTCACTGATGGAGGAGTTTCGCTCCGAGCTGAGGGACGAGGGGCTGAGACGCTGTGAGCTGCAGCAGACCTACGCCAACGAGAAGGCCACTTGGGAGGTGGAGTGGGCCGAAATGAAATGCCACATTGAGCAGCTGGAAGGTGAAAGTGAGAAATCCCCTGGTGACAACGAGACGGCTGACCTGAAGGGGGCATtcaagagggagagggaagagcACCGGCGCCTCTTGGCAGAAAGTCACAGCACCTCTATGGACTTGAACTGGAAGCTGcagtacaatgaaaaaaactgGAGCAGAGAGAAGTTGGAGCTGCAGGACAGGTTTGAGCGCGAGAGGCAGGAATGGGAGTGGCAGATGAGAGAGCTGCAGAAGAAGATGGAAAAGCTGCAGAAGGAGCTGAGTGCCCGGCGGGGTGACGATTCGCAAGGGGAGCTGAAGGACAGGGGGCACAGTGCCTTCTCCACGCAGGGCAGCCCTCATGCCCATCGCACGGGGGCCTCCCGGTCCTACTCCGACTCTGACGAACATTTCGACGAACACGCGGGGGCCATGAAGCTGAAGGAAAGTGATCGTTTCCGCGCCTCTGAGAACCTGTTCCTGGACGCCCTGTCTCTGGACTCTCTGAGTGAGAGCGAGGTACCGCCCCCCTCTCGACTGGAGAGTGAGAAGAAGTTCCCATGCTTGAATGAGGCTCTGAATGAAATTTCTGAGGAAAAGGATCTGTCCTCGTATCATGAAGAAGAACTACGAACTGGAAGTCTGCTAAGAGCAAAGTCAGTTTGCTCCATGTCTGAGTTCCAGCGTTTGATGGACAGCTCTCCTTTCCTGCCTGAGAAGAACCTGCATGGGGACAGTGGGAAAGATGAGGTCACTCCTCCCTTGTCACCAGATGACCTAAAGTACATCGAGGAGTTCCATAACAAGGGCTGGGGCTACCCCAACACCGCGCTCGGTGGAGCTGCCGAGAATCCAGCAGAGGCTTGGGCAGAAAGGACAGAGGGCAGGAAGCTGGATCAGACTTCACATCCATTCCAAGCATCCTCATGGTTCCTGACCACAAGCGTTACAATGACAACCAACACTCTGACTAGCCCTGAGCACTGCCCAAAGCCACCGCTGAGGAGCCCTGAGAAATACGGTGTCCGAGTCTTCCATAGCCCACCCCTTAGCCGCAAATTTGACAGCACAGTCCTTTCCAGTAGTGAAGAGAAGACAGCAGTTGACCCAGACTTCATGTTCTCAGTGACCAAAGCGAAAGCTAGTGAAAGCATGGGAGGGTCAGATGAGGTGTTTGGGAGATGGACTTGTGAACTGCCGAAACAACACAAGGAGCTCCTAGAGGGTGGGCTCCACCCTATAGAGCACCCCATCTGCTCTACTGTGGGCTTTGCTTCTTCATTGCATGAGCTTGAGCTGTCCAGGAATTTGAGTGACGATATGAAGGAGGTGGCTTTTTCAGTGAGAAATGCCATCCGGTCCAACTCTGCAGAGCGCCAGTTTAAGGACACTGCCTGCCAGACCAATGGCTTCACCACTAGGGGAACACAAACCACCCAAACTATCAGTGTTGGCCTTCAGACAGAAGCTCTGAGAAACCTCACCAGCAGTCCTCACAAGTGCTTAACGCCAAAGGGAGGTTCAACACCAGTCTCATCTCCATCCCGTAGCTTGAGGAAGATGCAGTTCTCCCCTGTCATCCAGAGCAAGTTTGAACGCCCATGCTGCTCTCCAAAATATGGTTCCCCGAAGCTCCAACGTAAAATCCCAGCCAAAGTGGATCAGGCCAATAACAGGGCAGCTGCTCCAACCACACCTCAAAAATGCTTCAGTGAGTCAGCCTGGGCTCGGTCAACCACCACCAGGGATAGCCCAGTCCACACCACCATCAACGATGGGCTCTCCAGCCTCTTCAACATCATCGATCACACACCAGTGGTCTTCGACACTTTGCAGAAGTTCACCAAGTCGCCCAGCCGTCCAAGCTCTGCAGAGCCCAGGCCTGTCGAGCCCAAGTCTCCTGGATTTGGAGTGGTTCAGGAGTTCCTGAAGAATGTCCGGGGCAGGTCTCCCAGTCCTGTCAGACTGATTGTAGAGGCTCAGGGAGAGAAAACCCCTGAGGTCCTTAGCATTAGACAGGACTTGTCTGCTCCTCCAGGGTACACCCTTGCTGAAAACGCTGCCAGGATCTTAAACAAAAGACTACTTGAGCAGGCCTTCAAGGAGGAAAAAAGACTGCCATCTAGTCCACCAAACCCGAGCAAGGAGGGAAGACCCACCGAAGGAACTGCCTCGTTCTCCAGTAGCTCCACCTCTGGAATCCTGCTTCCTGAGACCGGCCAGGCCAGCCAATCGGCGCCTGCCTTCCCGGTGGGCTTCTCATtccccatcctcctctcctcagTGGTCCCAACCTCCAGGAAAGTTCTGCTTTCCTCACGAGGAGCCGCAGCAGCCGCTAGAAGCTGCAGAACCCAGTCAGGAGCACAATCCTGCATGAAGCCTCGTCACTCCGACTCTGTGCCGTAGCGTCACTCGTCAAAAGCAGCTACCTGTGCAAGTGCCACTGACACACTCCAGTAGTATACGGACCTGTGTAGAACAGCAGCCCGATGAATGTCATGGGGGGAAACCACACGGAGCAACAGACATGGGatgtgattaaaaacaacaacaataaaacgtGCCTGTAAAAATCTAGGTTCTtgattgtaaaaacaaaatatatatacagtatatatacagtacatatatatattttagtctccatcatatttttttatgggTTTATCAGGTCTGTTTTTCAGATGTCAAAGGAAAACTTGCAGAATTACAATGAAAGTCAAATGTCTCTCTATCTGGACTGcctttttgatttatttattttttaatattctttttgttttgtttttttgttttggggtaCCTTACATTTGCACTCTTATACTTTtccatgtaaatatatttttttatgattgtcTTGCATACATTTGCCATTCACTTTTATTCCTATCTTCAGAAAGCTtgaacaaaaaagtaataacaataggaatcataatgaaaaaacaaaaccactgctTCATATCAGCTGAAGCAGATAAATATGATGTCAAAGCAAGATGatatatttgctttattgtgtGTTCTGTTCTTAAAAGGGATGcattaaaatcatttaataaaaaatgacaactgTGATGAATTTGATTCGTATTTGGAAGACAACTGTGCACAATTGTGTAATACTTGATTTGCATGCCTTTTGGATCCTAGCACTTTAGTGCATGTATATAAGGCTACTGTACTCCACTATCACTCGTAATGTGAGTCACTGAATAATTACCACTGTAAAAATGTTGTGAGGTTCATTCTGTATGGTAATTCTATTGTTACTTAATTTGCAtcaattcaaaaggaaaaaaaaagatttttaaaataaatgattgtaaCAAATTGACTGTCTTTGTACAGTTGTTATGaataagttttttttctttatttcttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019260 True 5639 mRNA 0.51 12 11669895 11697021

Neighbor

gene id symbol gene type direction distance location
AMCG00019267 NA coding upstream 21447 11640508 ~ 11648448 (+)
AMCG00019265 NA coding upstream 57820 11607016 ~ 11612075 (+)
AMCG00019263 LOC108432749 coding upstream 70082 11585793 ~ 11599813 (+)
AMCG00019264 LOC108432749,LOC108271270,LOC106579657,LOC106590348 coding upstream 102498 11554220 ~ 11567397 (+)
AMCG00019262 LOC106929367 coding upstream 134524 11525199 ~ 11535371 (+)
AMCG00019271 ndufv2 coding downstream 83380 11780401 ~ 11785241 (+)
AMCG00019269 ankrd12 coding downstream 124002 11821023 ~ 11838760 (+)
AMCG00019270 LOC106579643,LOC108432738,LOC108271222,LOC103038715 coding downstream 144122 11841143 ~ 11853279 (+)
AMCG00019268 ralbp1,LOC107667860 coding downstream 163855 11860876 ~ 11867010 (+)
AMCG00019273 LOC107750901 coding downstream 190984 11888005 ~ 11901076 (+)
G32674 NA non-coding upstream 32015 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 221644 11377956 ~ 11448251 (+)
G32549 LOC103376870 non-coding upstream 1161832 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 1560745 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 1749859 9917320 ~ 9920036 (+)
G32778 NA non-coding downstream 303942 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 912380 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 916264 12613285 ~ 12613926 (+)
G33075 LOC104962440 non-coding downstream 1614393 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 1936681 13633702 ~ 13638171 (+)
G32539 NA other upstream 1260398 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 2041233 9369898 ~ 9628662 (+)
G32286 NA other upstream 2130684 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 2321076 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 3285303 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 2742232 14439253 ~ 14486706 (+)
G33283 NA other downstream 3467327 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 3857798 15554819 ~ 15626955 (+)
G33406 NA other downstream 4346921 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 5752299 17449320 ~ 17452659 (+)

Expression


Co-expression Network