AMCG00019267


Basic Information

Item Value
gene id AMCG00019267
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11640508 ~ 11648448 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019267
ATGATGGAGAGTTTAAATGGCAGCAATCATGAAATCAAGCCGCAAAACCAACAGTTAGTTGAGAAGAAAAAGCTGAACCGAGCGCCTTCCCCTGCCAGACCCTTTCTGAAGGATATCCACTCACGCTCGTCTGCCAAACCCNNNNNNNNNNCTCCCAAATCTCCCAACCTGTCGAGTAAGCAGCCTCAGCAGCAATCAACGGGGCTCCCGGCGACTCAAAGCCGGCTGTCCAGGCGCAGCATCCCCGGTGCAAAGGACAAGCCCTCTCCTGCCAAAAGTAGCACTAAGTCGGTAGCAACCAAAAAGGCAACTAAGGTCATCCAACATGGAAGTGCCGAGCAGAAAGTGGCCGGGAAACAGGGTGACACACATCAAAACACTAAAGGGAAAAAGGGTAAAAGATGCACAGTAGCGGAGTCGCCCCACGGCTCACCCAGCCAGAGCCCGGCTGGTGGCCCCCAAGCAGGAGCCGGGCTGGGCAGGATCAGCCACACGGACAGCAGCTCTGACTTGTCCGATTGCCCCTCCGAGCCCCTATCCGATGAGCAGAGGCTCGCCCAGGCGGCCAGCAGCGATGCCGAGTCCGGcaccggctccggctccggctccgggTCCAGCGACCGGGACCTCCGTGCTGGAGATAACCTGCCTTTCGGGGCTTCATCTGCAGAAACCTCGGGTGGATCTCATAACATACCTCGTATTGTTGAACCCCCAGCTTGCTCGGCGTCCCCGGCCACAGCAAAGGACAAGGTGGCCCATGTGTTGTCCATGCAAGGACCAGGTAGCGGGGCAGGACATGCCCAGAAAGGTTTTGGTCAACTGGATCTTAGACTGGGCACCCCGAGCACCCCTGCAGACCTCATGCTGCTGGGCAAGAAGGGGTTAATAGAGGAGGATTTGCTAAGGGAAATCGACGATCTTCGTTCCGAAAATGACTATCTCAAGGATGAAGTGGACGAGTTGCGAGCCGAGATGGAGGAGATGAGGGACAGCTACCTGGAGGAGGACGTTTATCAGCTGCAGGAGCTGAGACGGGAACTGGACCGGGCCAACAAGAACTGCCGCATCCTGCAGTACCGTCTCAGGAAGGCCGAGCAGAAGAGTCTGAAGGTGGCGCAGACTGGACAAGTGGATGGGGAGCTGGTCAGGAGCTTGGAGCAGGATCTCAAGGTTGCCAAAGATGTCTCTGTACGTCTCCACCATGAGCTGGAGAGCGTGGAGGACAAGAGGGCGAAGGCAGAGGATGAGAATGAGCTCCTTCGCCAAAAGATCATTGAGGTGGAGATATCCAAACAGGCTCTTCACAATGAACTTGAAAGGGTGAAGGAGGCTAAGTCTGGATAG

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019267 True 1347 mRNA 0.56 4 11640508 11648448

Neighbor

gene id symbol gene type direction distance location
AMCG00019265 NA coding upstream 28433 11607016 ~ 11612075 (+)
AMCG00019263 LOC108432749 coding upstream 40695 11585793 ~ 11599813 (+)
AMCG00019264 LOC108432749,LOC108271270,LOC106579657,LOC106590348 coding upstream 73111 11554220 ~ 11567397 (+)
AMCG00019262 LOC106929367 coding upstream 105137 11525199 ~ 11535371 (+)
AMCG00019261 NA coding upstream 163220 11472122 ~ 11477288 (+)
AMCG00019260 NA coding downstream 21447 11669895 ~ 11697021 (+)
AMCG00019271 ndufv2 coding downstream 131953 11780401 ~ 11785241 (+)
AMCG00019269 ankrd12 coding downstream 172575 11821023 ~ 11838760 (+)
AMCG00019270 LOC106579643,LOC108432738,LOC108271222,LOC103038715 coding downstream 192695 11841143 ~ 11853279 (+)
AMCG00019268 ralbp1,LOC107667860 coding downstream 212428 11860876 ~ 11867010 (+)
G32674 NA non-coding upstream 2628 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 192257 11377956 ~ 11448251 (+)
G32549 LOC103376870 non-coding upstream 1132445 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 1531358 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 1720472 9917320 ~ 9920036 (+)
G32778 NA non-coding downstream 352515 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 960953 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 964837 12613285 ~ 12613926 (+)
G33075 LOC104962440 non-coding downstream 1662966 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 1985254 13633702 ~ 13638171 (+)
G32539 NA other upstream 1231011 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 2011846 9369898 ~ 9628662 (+)
G32286 NA other upstream 2101297 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 2291689 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 3255916 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 2790805 14439253 ~ 14486706 (+)
G33283 NA other downstream 3515900 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 3906371 15554819 ~ 15626955 (+)
G33406 NA other downstream 4395494 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 5800872 17449320 ~ 17452659 (+)

Expression


Co-expression Network