AMCG00019271 (ndufv2)


Basic Information

Item Value
gene id AMCG00019271
gene name ndufv2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11780401 ~ 11785241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019271
ATGTGGAGTGTGGACACCACCGAGAACAACCCTGACACCCCTTTTGAATTCACTCCTGAAAATGTAAAGAGAATTGAAGCCATTGTGAAAAATTACCCAGAAGGACACAAGGAAGCAGCTACCATCCCTGTGCTGGATCTGGCACAGAGACAGCATGGCTGGCTCCCTATTTCAGCTATGAATAAGgTAGCTGAGGTGTTGGGCATGCCAGCCATGAGGGTTTATGAAGTAGCCACTTTCTACACAATGTTCAATCGCAAGCCAGTAGGCAAATACCACATCCAGGTTTGCACAACTACACCATGCATGTTGTGCAACTCTGATAGCATCCTGGAGgccatacaaaacaaactggGTATTAAAGTCGGGGAAACCACACCAGACAAGTTGTTCACTCTCATAGAGGTGGAGTGCTTAGGTGCCTGTGTCAATGCTCCAATGGTCCAAATCAATGACAACTATTATGTAAGAATGGCCGTTTCTCCTGTGAACCAGCTGGAGGATTGA

Function

symbol description
ndufv2 Predicted to enable 2 iron, 2 sulfur cluster binding activity; metal ion binding activity; and oxidoreductase activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; optic vesicle; and retina. Human ortholog(s) of this gene implicated in Parkinson's disease and nuclear type mitochondrial complex I deficiency 7. Orthologous to human NDUFV2 (NADH:ubiquinone oxidoreductase core subunit V2).

NR:

description
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

GO:

id name namespace
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K03943 NDUFV2; NADH dehydrogenase (ubiquinone) flavoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019271 True 507 mRNA 0.47 6 11780401 11785241

Neighbor

gene id symbol gene type direction distance location
AMCG00019260 NA coding upstream 83380 11669895 ~ 11697021 (+)
AMCG00019267 NA coding upstream 131953 11640508 ~ 11648448 (+)
AMCG00019265 NA coding upstream 168326 11607016 ~ 11612075 (+)
AMCG00019263 LOC108432749 coding upstream 180588 11585793 ~ 11599813 (+)
AMCG00019264 LOC108432749,LOC108271270,LOC106579657,LOC106590348 coding upstream 213004 11554220 ~ 11567397 (+)
AMCG00019269 ankrd12 coding downstream 35782 11821023 ~ 11838760 (+)
AMCG00019270 LOC106579643,LOC108432738,LOC108271222,LOC103038715 coding downstream 55902 11841143 ~ 11853279 (+)
AMCG00019268 ralbp1,LOC107667860 coding downstream 75635 11860876 ~ 11867010 (+)
AMCG00019273 LOC107750901 coding downstream 102764 11888005 ~ 11901076 (+)
AMCG00019274 vapa,LOC102777368 coding downstream 139524 11924765 ~ 11930683 (+)
G32674 NA non-coding upstream 142521 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 332150 11377956 ~ 11448251 (+)
G32549 LOC103376870 non-coding upstream 1272338 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 1671251 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 1860365 9917320 ~ 9920036 (+)
G32778 NA non-coding downstream 215722 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 824160 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 828044 12613285 ~ 12613926 (+)
G33075 LOC104962440 non-coding downstream 1526173 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 1848461 13633702 ~ 13638171 (+)
G32539 NA other upstream 1370904 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 2151739 9369898 ~ 9628662 (+)
G32286 NA other upstream 2241190 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 2431582 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 3395809 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 2654012 14439253 ~ 14486706 (+)
G33283 NA other downstream 3379107 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 3769578 15554819 ~ 15626955 (+)
G33406 NA other downstream 4258701 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 5664079 17449320 ~ 17452659 (+)

Expression


Co-expression Network