AMCG00019272 (ppp4r1,LOC106579644,LOC106590337)


Basic Information

Item Value
gene id AMCG00019272
gene name ppp4r1,LOC106579644,LOC106590337
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11852108 ~ 11885571 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019272
CCGGCGCACCTCCGCGACGCTCCGCTAGAGGGCGCGCTGCTCCCCATCCCTCCGCTGCGCGGCGCGGCGCTtccctctctccccgtctctccaGCAGCTGCGGCGGAGACCACTTTAAATGTAGCACCAGGACAAGATGGCGGGTACGTACCGCCGACTCCAGCTGCAGCCGTCCGCCTTTTAACCCTCTTTCCCACAACCTCATCCCCCCCAGACCCGTGTTTTAAGCGAGGCGATGACTCGGCGAGGCTGCCGGCGGGCCGGCGATtgacctgtctctctcttgtgtCCGCAGATCTGTCTCTGCTCCAGGAAGACTCTCAGGAGGACATAGACGGATTTGGTGTGGATGACTACAGCTCTGAATCTGATGTCATTATTATACCTTCTGCCTTGGACTTTGTTTCACAAGATGAGATGTTGACACCTTTGGGAAGATTGGATAAATACGTTGCAAGcgaaaatatttttaacagACAAATGGTTGCTCGAAGTTTGCTGGACACTTTAAAGGCAGTAAGTGAGGATGAGAGGGACTGTATCGCTGTGCTGGAGAGAGTAAGCCGACTGGCAGATGATTCAGAGCCAACTGTTCGAGCAGAATTAATGGAGCAAGTCCCTCACATAGCTATTTTCTGCCAAGAAAACAGACCTTCCAttccctttgctttttctaaataCTTACTACCCATAGTGGTGAGATACCTCGCTGACCAGAACAACCAGGTTCGAAAGACCAGTCAAGCTGCTCTCCTGGTGCTATTAGAGCAGGAGCTCATCGAGAGATATGATATTGAGACCAAAGTGTGCCCGGTCCTCGTGGACCTGACCGCCCCTGACAGCAACGATGATGTGAAAACGGAGGCCATGGCAATTATCTGTAAAATGGCCCCCATGGTTGGAAAGGATATCACTGAGCGACTCTTCCTTCCCCGCTTCTGTGAGATGTGCTCCAATTTTGGAGACATCTGCAGTGTGGTTGGACGAGAGGCAACAGAAGAGCTTCTGCTGCCCAGGTTTTTCCAGCTCTGCTCGGATAACGTGTGGGGGGTGCGGAAGGCCTGCGCCGAGTGCTTCATGACCGTTTCCTCTGCCACGTCTCAGGAAGTCCGCAGAACAAAGCTCGCGTCCCTCTTCATCAACCTCATCAGCGACCCTTCCCGTTGGGTGCGACAAGCTGCCTTTCAGTCTCTTGGTCAGTTCATCTCGACGTTTGCTAGCCCCTCCAGCTCAGGGCAGTACTTCAAAGAGGAGGAGGACCGGGATGCCTGCAGATGCACACATGCCCACAGCAGTTGTGAAGAGGAGTCCCAGGACAAGGAGACTGCAGGAATTGAGCCCTCCCCTGAGGTGGGGGGGTCTGAAGAAGAGTCCAACGGACAGGAGGAGCACAGTCTGTGCTGCAGCACGGGAGAGGAGCGCTCCCTGCTGTCGTGTGAGATGAGCCAGGACTCCTCCTGTGCCAGTGATACTGATGACCACTGCGACACGGAGCCACACTCCTGCTGCCATTTGGAGGAGGCGCAGGAGTCATTAGAGTCCAGCAcccaccagcagcagcaggaggaagaggtTGAGAAAGAGGTGGAGGAGCTGGGTGGAGACGTGCCTTCCTCACAGGCCTGTCCTGCAGAGAACTGTGTGGAAACCACTTTGAAGTGCCCTGTGGAGACCCAGCTCTCGGCTGATCACACAGACCTAGCCAGCACAACCCCCGCCGAGTGCGGCCGGCCCTGCCCCAAGGAGCCGCTCCCTGAGCAGGAACTGTATAACTCATTCCATTACTGGAGGACTCCCATTCCCCACATTGACCTGGACCTggagctccagcagcagcagaaggcCGAGGAGTTGCCGAAAGAGCCCCGCCCATCTCCCTCGGCACGCGGCCCCTCCATCAGCCCGGCGCGCCGGAAAGAGCTGATGGAGTTGATCGAGAACCTGGAACCCCATATTGATGACCCTGATGTCAAAGCACAAGTAGATGTGTTGACTGCTGCCCTACGAGCCTCAACGCTGGAGTCCCACCAGGACGACTCCTCCCAGGACCCTCTGGATGACCGGATAGAGCACCGCAGGCAGGCAGGCGGCCAGGGCGGCTTCATGTCAGACACCGTGCATTTCATTGGCAACCGGGTGGAGATGGAGGGCCGGGAATCCACCCTGCAGCTGAGCCGCGGCGACGACTCGGAGCTGAGCGACAGCAGCCTGAGCCCAGAGGAGGACCGGAAGTGCCGGCAGCAGGACGTCGTACCTCAGGCCCTTCTTGACCAGTACCTGTCCATGACCGATCCTTCTCGGGCCCAGACAGTGGACACTGAGATTGCAAAGCACTGCGCCTACAGCCTCCCTGGAGTGGCTCTAACCTTGGGCAGACAGAACTGGCACTGTCTCAGGGACACCTATGAAACGCTGGCCTCTGACATGCAGTGGAAAGTGCGCAGGACTCTTGCCTTCTCTATCCATGAACTGGCCCTCATCCTGGGAGACCAGTTGACCGCTGCTGACCTCGTGCCCATCTTTAACAGCTTCCTCAAAGACCTGGATGAAGTCAGGATAGGCGTTCTCAAGCACTTGTATGACTTTCTGAAGCTGTTACAccaggagaagaggagagaataTCTTTACCAGCTGCAGGAGTTCCTGGTTACAGACAACAGCAGGAACTGGCGCTTCAGAGCTGAGCTGGCAGAGCAACTGGTGCTGCTGTTGGAGCTCTACAGTGGGAAAGATGTCTATGACTACCTGCGACCTCTGGCCTTTAGCCTGTGTACTGACCGAGTCTCCTCAGTCCGGTGGATTTCCTACAAGCTGGTGAGCGAGATGATCAGAAAGCTCTCTTCAGATTCGACTCTGGTTGCAGATTTTATGGTGGAGCTGGTGGATAAGTTCTGCCATTCCCCAAAGTGGTCTGGGCGGCAGGCTTATGCTTTCGTCTGCCAGCTGGCGATCGAGGACGACTGCATCTCCCTGGAGCAGTTTTCAGAGTACCTGCTGCCCCCGCTCCTGCAGCTGGTGTCGGACCCTGTGCCTAATGTCCGCGTGCTCCTGGCCAAGACCATCCGCCAGAGCTTGCTGGAGAAAGAGTATTTCCTGCACTCGGCCAACTCCCACCAGGAGGCTCTGGAGCAGACCTTAGTGGCCCTCCAGATGGACCTGGACAAGGATGTGAAGTACTTTGCCAGTGTGCATCCCGGCAACACTCGGATCAACGACGACGCCATGAGCACGGCCTCCTCGACCTACTGAGTGCCCTGCCTGCCCTGACCCACCAAATACCCTGGCCAAGCTGCCTGCTCCCTCAGGCACAGCTCCAGAGGACCAGGGCACCAGGGCACCGGGCACAGGGACTCCAGAGGGACCCCCCTGTCGTGCAGAGCTGCACAGAGGGAACGTCGCTCCTCCTGACCTGAGAATGGGCAGCAGCCTTCTGAGCCCCAGTGACTACTGCTGGTGGGCACTACTGCAACAAAACCACTTGGGAATGACTGAGAACACACCTGATTCGACCTCCTTCACAAACCTCCTACCATCCtaacttttttttctgccaCAGAAGCCTTAAAAGAGTCTTCCTTAATgagaaaatacttgaatttcTTGAGCCGTTTCGTTGAAAGAAAGGGGGGGATTCAGTTTCTCAGATCATTCCTCCATTCttcttttaaaactttttgttGTAGCAGAAGACAGTATGACAAAGCTTTATTGAACCACATGGCAGGAAAGCTGTGTCTAACTTAATGTTTAAAGTGTAGGGTTTTTTATACTATGTACATTTCTTAATCATATGCTGCATAAAATGTTCTATGTACTATCACAGCCTTCTATGTGAGTTCAAGAACTGCTTGGTAATGAAGCACGATTTATCTTAAGGGCTCAGTGCTACAGTGTTTTTAAACTCTAGTGCAGCACATTGTTGTACCCATGTACAGAACCGGCTGGACTCCAGGGGTCCTGTTCtcatgacaaaaacaatattgtactttttattatgCTGGCCATTTTGTggagtaaataaaaagagaaaaaggttAGCACATGTACTTGAAGTCAGGTATTTTAACTTGATAATGAAATACTGCACcttcttttgcttttcttatgggttattttcacattctgtACATATCTttggccttttttttcttttttttttttttcgtttggTCTACGATCATGTTTACTATTGTGATA
>TU41035
CTtccctctctccccgtctctccaGCAGCTGCGGCGGAGACCACTTTAAATGTAGCACCAGGACAAGATGGCGGATCTGTCTCTGCTCCAGGAAGACTCTCAGGAGGACATAGACGGATTTGGTGTGGATGACTACAGCTCTGAATCTGATGTCATTATTATACCTTCTGCCTTGGACTTTGTTTCACAAGATGAGATGTTGACACCTTTGGGAAGATTGGATAAATACGTTGCAAGcgaaaatatttttaacagTCAAATTCCTCTGTGTAGAGAAAGTTTAATTTCAGATCTTGAGTAtataaggttttgttttggattaTAGTAGGTGCTTTATACATAATGCATTCACTTGCAAACATGTCTGTATAATCcaagtacatttaattataaatgttttttaaaatccattattTCAATCTGCAGTTTCGCTAGATGTGGTTTTTGTGCGTGTTCACAAGTTGTCTGACCTCGGTAAAAGACCACACTGATCAAAGAGAATCTGTATTTATAACCACAAAATCCAAAAATCACATATCAAGATTCATCCTCAGTTCACACAGACATTACTGTGAATTTCATTAAATCAAAGACTGTGGTTTACATGCTGTGATCCATTTGACTTGCAATATACCTGCTGTgatatgtttttgaaaaagcaCACATCAAAATCTTTTGATAATTAAACTACTATTAATTTCAAGGCACTGAAGATAAGAGTTCATATCCCTACAGTCAGTAAATCTTGGCATAGCATGCATTTACCTGTAAAGAAGGATCAGCTATGCAAGAGTaggtttcagaaaaaaaaaaactggaaaaaaaaaaactattcatatACATCTCTGGTAAACAcctataaaaaaactaaaatatacagtaaacatgagaaaatacaaatgttttggcAAGGGCAATTATTTTACATCATACAATTGAAGCGTGTTATGCGTGTTAGGTCAAAATCAGGCGCCAGTCGCACTCGGGCGCTCAGCAGGAAAGGTGGCACTCGGCTTCAGGACTCCTTTTCTTTCAGCTCCGTTTTCCCGACGTCAGTCATGTGAAATACAAGTACTAAGTTTTCGAGAAAGTCTGACTCAGAACAGGCAGTTCATGCACTTGACGACTCTGCTTCCATAGTCGAGGCACTCCGGACCTATGCACTCGCAGCAAGCGTTGTGGAACCATCTGTATTTGGAGCCGCCCATGGACTCGCAGTACTTTTTACACTGGAGGATGGATACGCAGTCGTCGAAGTACACCACGGTGCACAGGTTATCTGGAGAGGACCGGGGATAAAGGACAAAGAATTCCATTAGGGCCTT

Function

symbol description
ppp4r1 Predicted to enable protein phosphatase regulator activity. Predicted to act upstream of or within regulation of catalytic activity and signal transduction. Predicted to be part of protein phosphatase 4 complex. Orthologous to human PPP4R1 (protein phosphatase 4 regulatory subunit 1).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X1

GO: NA

KEGG:

id description
K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019272 True 4197 mRNA 0.53 19 11869464 11885571
TU41035 False 1325 lncRNA 0.40 4 11852108 11885502

Neighbor

gene id symbol gene type direction distance location
AMCG00019266 LOC106596660,LOC106569828,LOC100697261 coding downstream 77791 11758115 ~ 11774317 (-)
AMCG00019256 NA coding downstream 523749 11283571 ~ 11328359 (-)
AMCG00019258 NA coding downstream 656317 11177703 ~ 11195791 (-)
AMCG00019257 NA coding downstream 726391 11120227 ~ 11125717 (-)
AMCG00019253 NA coding downstream 749261 11101972 ~ 11102847 (-)
AMCG00019277 apcdd1,LOC107383547,LOC100712112 coding upstream 50533 11936104 ~ 11954459 (-)
AMCG00019278 NA coding upstream 167089 12052660 ~ 12053218 (-)
AMCG00019279 piezo2 coding upstream 192991 12078562 ~ 12138607 (-)
AMCG00019288 NA coding upstream 557117 12442688 ~ 12445186 (-)
AMCG00019286 usp14,LOC106569325 coding upstream 569508 12455079 ~ 12463992 (-)
G32706 NA non-coding downstream 215791 11633509 ~ 11636317 (-)
G32693 NA non-coding downstream 251437 11596816 ~ 11600671 (-)
G32635 NA non-coding downstream 732601 11118708 ~ 11119507 (-)
G32587 NA non-coding downstream 883335 10968517 ~ 10968773 (-)
G32586 NA non-coding downstream 883705 10968129 ~ 10968403 (-)
G32773 NA non-coding upstream 44933 11930504 ~ 11979273 (-)
G32779 NA non-coding upstream 115379 12000950 ~ 12001165 (-)
G32784 NA non-coding upstream 174053 12059624 ~ 12060251 (-)
G32786 NA non-coding upstream 176707 12062278 ~ 12067052 (-)
G32825 NA non-coding upstream 481215 12366786 ~ 12367226 (-)
AMCG00019213 NA other downstream 2417994 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 2950230 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 5167807 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 6865724 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 6911441 4932349 ~ 4940667 (-)
AMCG00019284 NA other upstream 527583 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 1282865 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 1776545 13662116 ~ 13665230 (-)
G33163 NA other upstream 2606320 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 3066271 14951842 ~ 14991996 (-)

Expression


Co-expression Network