AMCG00019277 (apcdd1,LOC107383547,LOC100712112)


Basic Information

Item Value
gene id AMCG00019277
gene name apcdd1,LOC107383547,LOC100712112
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11936104 ~ 11954459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019277
CTCCTGTTCACAGCGGCTTCATGTCAATGTGAGGGGCTCCACACACAGAGACCCGAATGGATCAgggcagacagactcaatgCTCTTCAATATCACTCCCACAGACGGCTGATCTGAGCGCGTCCAGGAGCCAGAGCTCTCTCAGCTGTCCGGGATATCCTAAGCAATTCCCTGATTGGGATTGGGAAACGATCTCTTACTACAGTTCCTGTGGGAATATAATTCATCCTTAATCTGCGATGCAAATCACTGCTGTCATTTTTGCTTCCTTTTAAGCAGTAGGTTTTGATGCCAGCTAGGCGCACAGAGATGGTCTTTGGAAAAGCAGTGTCCTGACTTGATATATCCTGTAAAATCAGTCttggtgggggaaaaaagaagaaatagagGAATGCGGTTtgaagctttattttaaaatccttccTAGGCACAAGGGACAGTTTCGTTTTTGGTCTTTGAAGTGTGGCAAGTGTTTCACCTTTCCCAGTGATGAACAGGATTACACATTAACCGAGAGCTGGAACTAAAGCGCAGCTGGAAAGCTTGGATTGAAACCCCAGAAACGTGGAAGatacaaactaaaatacaaataaaatgatacacCCTATCCTCAGTGCCCTTTACACATCTATGTTACTAATTGGCATCCTTGGTTCAGGAGAGTGCTCCTCACCCCACTTTCCAGACAGCAGGATAAACCCTCTGTCTCTGGAGAAGAACGTGGGAAGGCAGCCGAAGGATTCCCAGTGCCACCACATGCTGAAACACCTTCACAATGGAGCCAGGATCACTGTGCAGATGCCACCTAACATTGAGGGCCACTGGGTCTCCACAAGCTGTGAGGTGAGACCCGGCCCCGAGTTCATCACCAGGTCCTACAAGTTCTACCAAAATAACACGTTCAAAGCCTACCAATTCTACTACGGGGACAATCACTGCACCACCCCCACCTACACGCTGGTTGTCCGGGGCAAGCTACGCCTGCGGCAGGCCTCCTGGATCATCCGTGGGGGAACGGAGGCTGACTATCAGGTGTTCCGGACCCAGCTGGTCTGTCACAGCGAGGCCGTGGCCAAGGACATGAGCCAGCGGCTGAACCATAGCTGCCGAGGAGTGGTGTCCAGAGACGGGGCCTGGGAGCCCAACGTCAGCTATGACCTGTGGAACGAGGAGATGGGCTGCGACTGCTCCAAGGACCTCAACTTCGCCATGCACGAGCTGCAGCTGATGCGCGTGGAGAAGCAGTACCTACACCACAACCTGGACCACCTGGTGGAGGAGCTCTTTCTGGGAGACATCCACACCGAGCCAGCACAAAGGATGTACTACAGGCCTTCCAGCTACCAGGCGGCGCTGCAAAATGCCAAGaaccacGACCAGACTTGCATCGCCTGCCGGATCATCTTCCGCTCTGATGAGCACCACCCTCCCATCCTGCCCCCGAAAGCAGACATGACCATCGGCCTACACGGCCAGTGGGTGAGCCAGCGTTGCGAGGTGCGGCCCGAGGTGCTCTTCCTCACACGCCACTTTGTCTTCCACGAGCACAACCACACCTGGGAGGGGCACTACTTCCACTACTCCGACCCCGTGTGCAAGCATCCCACGTTCAGCATATACGCCAAGGGCCGCTACAGCCGTGGGGTGCACTCCACCAAGGTCATGGGAGGGACCGAGTTCGTCTTCAAAGTGAACCACATGAGAGTGACGCCCATGGACTTGCCCACCACATCCCTCCTCAACGTCTTCAGTGGCAACGAGTGCGGGGCGGAGGGCTCCTGGCAGGTGGGGATGGAACAGGACGTGACTCACACCAATGGCTGTGTGGCCCTGGGCATCCGTCTGCCCCACACCGAGTATGAGCTCTTCCGCATGGAGCAGGACGCGCGCGGGCGCTACCTGCTGTACAATGGCCAGAGACCCAGCGATGGCTCCAGCCCTGACAGGCCGGAGAAGAGGGCCACTTCCTACCAGACCCCACTGGTCCAGTGCTCCTCCAGCAGTCAGAGCTCAGAGGGGGACGGAAAGGAGAAACACAGCGATGCGAGACCCAGCGGCGGCTCAGGGAGCAGCCATAGTTCTCGGTTGGACACCATCTGTGCCTTGACCGTACTCACCCTCCTCCTGTATTTCAGctaaagagagaaaagaagaaaggcCGCCTTTTTAATCGTGCTGATCATCACAAAGAAGGGCAACTGAGACATCCTGTGGTGGGGCAGCTTCTATCTTCAAAGGCAGCCTGTTTGTTTACTTGATGTactcgaatgccttgaaactGTCGCTCCTTTTTTGGGGCAGAGGCAGAGGGGGTGGGAAGTGCAAGGAGACAGTCCTTTGATGCTGCCATCcgctgtttttcatttgaactCCATCCAGTGAAGCTGAGACTAAAAACTGCTGCACAACAGTAACTGCACTTTAGTAGAgcagatgtgtatatataaatctcaAGCTGTTTGTGACTGAAAGGAGACAGGAAGAAAAGACATGATAAATTGCGTGGAACtgattttcttttgctgttttaAACAATCTGAgggaaatatatacatgtatatgcaaAGCTTACTGTGCCTAACATTACTAATTGAGATTAGTACTGATGACTACGGTGCCTTCATACACCAAAGGTGAAGATGCACAGAAAATACTACAGTCTGGGTTTTAAAAGGGAAGTACAGCACATGGTCGATACGCAATAACTTTGAGGGCTAGAGAGAAGAACAAAGAACCATATTCAACATTTACGTTATCCTTGCTTTTCCCACTTTCCTTTCAGAaccaagaaaatgttttacaatatagTGGTATTTTCTCCAggtacaaaaaaacattaaagactgattaaatcataattttgtgtttttctgaataTAGATAGTGGATGTGCATTAGCAGTCTGTCCCTTAACCTTTCTGTGAACTGATTTAGTCCCAGACATGCTTTGGGATGAAAGTTGCACTTTTGCAaaggtctttatttattttacactgttaGATTGTCACGGCTCAGTCTTCAAGTAAATTACTCTGTAAGCTGTTATTCTGCAGAACTGGAATCATTACGCATATGAAACATTTAAGCTGTTTTTGGAGCGTTTGTTGTACCCTGTTCCTTTGTCATCCTGTGTATCTAAGAGTGACCCTGCAGGAtgtcttttaaaacatgttccAAGAAAATGAGTGTTAAAAAACACCACAGATGCCATTCCACAGAATCTGAGCAAGACAAATATACAAGTGCCGCTTCCTAGGACTGGGAACACAGTGGGGGCACCGTATCTGGAGTGATTCTGTAATACACAAAGTGCATAATGATTGTTACAGTTCTTGGTTTACAACACAGGGTAGCAGCCCTGATCACACCAAACTGTAGGCCGTTCTACCAAGACAAAGATTCGTCTTCACACTTTTCCGAATAGACAATGTGTTCCTCTCTAAATCTTTACTCAGGTAAACTCCTATTCAGCCTTGTGATGAGATCATGCCTGGTTTCTCAGCCCTCCATCTGGAAAGACAAACATCAAGTTGCTGTGGGAGACCCAGTGGCTGTGTTCCACTGTCTTGGCTCAGTGGCCCTCTGTCTAACCACCAGAACACACTGTGGCTTGGTGACCTTCCAGAAGGCCACAGTTCAAAGAAGCGCCTGAAGAAAAACTCCCAACGGCTGTTCTTCATTTGACCTCTTATGTGCTTTATCAAAAAGAAAAGCTTCATATGTGCAGATATAATTCATAGTGTGGTTCCTCAGAGAGAAAATCACTCTGTTCTAAAGCTAATATCTTGTACACTCCAGACTCCAGACATATATTACTGTATGTACTTACAGAAACAACTTTTAGCATcctataaatgcatacatacttCTGAAACAATAGTATATTCTACAGCTgtcttaataaaaacatgaaaacaacaatatcaaAATATGATCTAAatgaatcattttcatttttgcacaATAGTAGCATCCTGGAGGCAACGTTTCAATAGActtctgttgtttcttttaatgcatAACAACTGAGCTCAGTGAAAGAGAATGCAGTGCAGTGACATTTAACAGATCATTGCACTGAACATGGGATGTGAGATATTAAGTATTGGTCATTTGGCTTGTCGACTTGTTTAGCAATGTAAGCATTCCTTTTagtataaataagtaaaacacaTAATTGTGAAAACATTACGCCAGATATTCTAACTCTACTAGCTGGATTATTGCCACATAACATGAGATGTGTATATCACTGTTGTCACTTGGTGCTATCCAGGGGATTATGTATTGTTTGCCTTTGGATTAAAACGGTtcgaaat

Function

symbol description
apcdd1 Enables Wnt-protein binding activity and identical protein binding activity. Involved in hair follicle development and negative regulation of Wnt signaling pathway. Is integral component of plasma membrane. Implicated in hypotrichosis 1.

NR:

description
PREDICTED: protein APCDD1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019277 True 4319 mRNA 0.47 5 11936104 11954459

Neighbor

gene id symbol gene type direction distance location
AMCG00019266 LOC106596660,LOC106569828,LOC100697261 coding downstream 161787 11758115 ~ 11774317 (-)
AMCG00019256 NA coding downstream 607745 11283571 ~ 11328359 (-)
AMCG00019258 NA coding downstream 740313 11177703 ~ 11195791 (-)
AMCG00019257 NA coding downstream 810387 11120227 ~ 11125717 (-)
AMCG00019253 NA coding downstream 833257 11101972 ~ 11102847 (-)
AMCG00019278 NA coding upstream 98201 12052660 ~ 12053218 (-)
AMCG00019279 piezo2 coding upstream 124103 12078562 ~ 12138607 (-)
AMCG00019288 NA coding upstream 488229 12442688 ~ 12445186 (-)
AMCG00019286 usp14,LOC106569325 coding upstream 500620 12455079 ~ 12463992 (-)
AMCG00019287 rock1,LOC106569322 coding upstream 511667 12466126 ~ 12504550 (-)
G32706 NA non-coding downstream 299787 11633509 ~ 11636317 (-)
G32693 NA non-coding downstream 335433 11596816 ~ 11600671 (-)
G32635 NA non-coding downstream 816597 11118708 ~ 11119507 (-)
G32587 NA non-coding downstream 967331 10968517 ~ 10968773 (-)
G32586 NA non-coding downstream 967701 10968129 ~ 10968403 (-)
G32779 NA non-coding upstream 46491 12000950 ~ 12001165 (-)
G32784 NA non-coding upstream 105165 12059624 ~ 12060251 (-)
G32786 NA non-coding upstream 107819 12062278 ~ 12067052 (-)
G32825 NA non-coding upstream 412327 12366786 ~ 12367226 (-)
G32844 NA non-coding upstream 498138 12452597 ~ 12453627 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 50533 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 2501990 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 3034226 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 5251803 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 6949720 4941059 ~ 4986384 (-)
AMCG00019284 NA other upstream 458695 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 1213977 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 1707657 13662116 ~ 13665230 (-)
G33163 NA other upstream 2537432 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 2997383 14951842 ~ 14991996 (-)

Expression


Co-expression Network