AMCG00019284


Basic Information

Item Value
gene id AMCG00019284
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12413154 ~ 12423320 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019284
tattattttcttctttaaaaaaaagatattgttagaaatatacacaaacacattcctTTGGGGTGGCGGTGTATCttgtacatttctgtaattCCTCAGGTCTCTCAGGTTTGTGGAGCCGGTTCATCCAGTGGCTTGAAATTCTGCATTCCGTCTCTTTGAGGTGCATCTTCAACCTTCTGTACTCCTGGGGCTAAAAAAGCAACATATAGGTATATATTGCTCAgataaatgtgcttttcattgaAAACACGTACTATAATTTGATAATGCCATTCTGTCCAAAACACGTGTGACTTAGGAAAAAACCATAACATGTATGTCAAGTTTACTTCATTGTGTGTCTGCCTGCGTAAGTCAGGACAATCCAAGCATGTTTTACATTGCACACATATGAATCATTTTCATTCCATGCATACCAACATAcacttgattattattactgtttaatacaagaaacaacaaaaacaacactactACCCATTATTCTTCTTATTTACAAATGAATAGAGACCAATTTAGTAAACCAATCGCAGtccctcacccccacccccctcctcttccAGTATGGTAGGACAGCAGAGCagattttttctgtttttctcacgATTGACCTCAATTGAGGCTTAGTGAGGAAAAAGATGCTTTGAATCATTCGGATTGGGTTTTAATCTGGGATATATAGGCGGTGTCATCTCTTGCATATGTGAAAGGGGCTCTGATGAAGGATGCCTGGTCATCGGAAGCAGAGGACAGATGCAGTAAAACACAGCAGCAGACCAGCAGGAAACCCGCCGCAATCTGAGATGGAAACGTGCTTTACAAAAGAAAGGGCATAGGCGTCGATTAACAATGTGGAGGAGCTGAAACAGCGGAGGTCCGAATAGGCAGCGATCACACAGGAGCCGGTGCAATGATGCATTAGCGCAGATCAGGCATGTCAAGGTTGTGTGGCAGATGGGTCTTCATAGCTCTCCTGTGTGGGTGCGTCGGCTGCGTCTTCATCTTCTGTGAATATCTCATCTACTACCCGGCGGTCCTCCGCTGTGCCTGGCCGGGAGCAGCCTCGGGTCCGGGGGCGGACGGGGGAGCCGCTGCCCCGCTGCTCCGCGCCCTGGTCCTGTCCGACACCCACCTCCTGGGCGCCGTCCGGGGACACTGGTTCGACAAACTCCGCAGGGAATGGCAGATGGAAAGGGCTTTCCAGACAGCTCTGTGGCTTTTAAAACCAGAGGTGGTGTTTATTTTAGGGGACATCTTTGACGAAGGAAAGTGGAGCTCCCCAAAGGACTGGGAAGATGACGTGAGGCGCTTCCTGCAGATGTTCAGACACCCCAGTGACACTGAGCTGGTGGTTGTTGCGAATTCCAAACGAGACCGATGCCGTGATGTGCACAAATTCCCTCCATCACGGCCCATCATTCTCCAGCACTACCCTCTGTATCGAGTCAGCGATGCTGAGTGCACAGGGGAGGATGCGGCCCCTCCTGAGGAGAGACACCAGGTGTTTAAGGAGCAGTATGACGTGCTCTCCCAGACAGCTTCTCAAAAGCTGCTCTGGTGGTTTAAACCCCGGCTGATCCTGAGTGgccacacacacagtgcctgcCAAGTCCTCCATGGAGACAAGTTTCCCGAGATCAGCGTCCCCTCATTTAGTTGGAGAAACCGCAACAACCCCAGCTTTATTCTGggCAGCTTTTCTTCAGAAAACGTCACTCTCTCCAAGTGTTTCCTGCCCCAGGAGAGCACCGTCATCACCGTGTACTGTACTACCGGGGTGGTGCTGATCATTTTGACTTTAGTTCACCTTCACATCTTTAAAGGCACTGTGCACTTTGCAAGTTGCCTGATTAGCAAGCACAAGTCCTTGTGACTGATGATAAACATACCCCAGGCCTTTTCTACAGCCTGCCTAAAGCAATTACAACTTTGGTTTATGTAAGAAGCACAAATGTGAAGCACAAATGTCTTTCCTGAAGTCTTCGGAGACACAGCACAGATCTAGTGATGGGCCTGCAAACTCGCACATTTAAGAAAGTacaataaagttttaaataacttttctcTCTGTATCATACTTAACGGTTCTGTTTGTCAGTATCTATATCATGCTGCTTAAACCTACAACATAACTCACAGAGTGCAGCAATTTTATGAAATAGCACAATATGAAACCAGCTCAATAAAGCCAGGTTCGATTTTGTAAACTTGAGTGTGCACGAAACTACAATGCAAAAAATTCAAGCACCaataaaatgaagtgaaataatTGAAGTAATGTAGGCTAACACTTAACTGGGTTTCTGTTATTGCAACtgtaattttaaacattgtacaAATTGTACAGGTCATCTCGGACACATGAAAATGATATACTCACAGAGACAAACACctaagtataaaatataaagcagtGTAATAGTTACTAAAAAAGGACATGCCTTATTGCTAAagcaatttttgcttttttttttttaaatcgcaCTGTACCACaacttgttctgagaaatgtaatttgcataaaTTATTCAAGTTAGAGAAATATTCACACTTttcaattctaaaataaaacgAAGTCTTCTAATGTGCCTCTttattaaaagagaaataaaaatgtcattttgtaaTTCTCTCAGGCCAGACACAAGGGtttacaccttttttttttctctcttactATTTACCTGCACAATAAAAGCTGCTGTTGGTACAAGGATTTAAGAGCCTATCTATGGTGCTCACACATTCACAATATGCCTGTGCAATTGTGAAGGTCTATGAATGACCAAAGAATTACCAAACTCTGTCTCATTCattcatgtgtgtatgtatatctgtgtgtgtgtgtgtatatatacacacacacgcatacacaaacacacatacacactcacaaacgTATACATAATGCATCTGTGTGAGTAtatgtatgtctatatatacacatgcacgcacacacacgcatgtgtTTATATCTCACACATACTTCATATCGAAAAAAGTTGGTTCCTATTAAAACAACACCAGGTTGCAATTTGGACACTTCAATggattcaaatgttttaaagctgagaatcagaaagaaaaggaaaaacaaaacaaaatgaaggcaTGTTGCTGCAACATCTGGTCATCACTGTAGGTAAGTggttaatttgcataatttatacagttttttctttttttttctgtttttttagtttttttttttttttagatttttttttttttactaaagagcatttcctttttttataaaccagaaaaaactaaactctACAGAGAAAGTCCCCATCTGCAGTCACTCCTGCAGATAAGGTTGACATCAAGCTGTACAGCGCAATCAAAAACATACTTACATCTTAGCTCATTTTACAGGTACAGCCATAATCAAGGCACAAAGATCTTctacaagtattttttttcaataaagttgtacaaaataatattacattttacagtctGTACAAGATAATAAACCAGCAGTAGAACAAAANNNNNNNNNNaaaaacgaacaaaaaaaaatatataatata
>TU41125
cagGCGAATTCCAAACGAGACCGATGCCGTGATGTGCACAAATTCCCTCCATCACGGCCCATCATTCTCCAGCACTACCCTCTGTATCGAGTCAGCGATGCTGAGTGCACAGGGGAGGATGCGGCCCCTCCTGAGGAGAGACACCAGGTGTTTAAGGAGCAGTATGACGTGCTCTCCCAGACAGCTTCTCAAAAGCTGCTCTGGTGGTTTAAACCCCGGCTGATCCTGAGTGgccacacacacagtgcctgcCAAGTCCTCCATGGAGACAAGTTTCCCGAGATCAGCGTCCCCTCATTTAGTTGGAGAAACCGCAACAACCCCAGCTTTATTCTGggCAGCTTTTCTTCAGAAAACGTCACTCTCTCCAAGTGTTTCCTGCCCCAGGAGAGCACCGTCATCACCGTGTACTGTACTACCGGGGTGGTGCTGATCATTTTGACTTTAGTTCACCTTCACATCTTTAAAGGCACTGTGCACTTTGCAAGTTGCCTGATTAGCAAGCACAAGTCCTTGTGACTGATGATAAACATACCCCAGGCCTTTTCTACAGCCTGCCTAAAGCAATTACAACTTTGGTTTATGTAAGAAGCACAAATGTGAAGCACAAATGTCTTTCCTGAAGTCTTCGGAGACACAGCACAGATCTAGTGATGGGCCTGCAAACTCGCACATTTAAGAAAGTacaataaagttttaaataacttttctcTCTGTATCATACTTAACGGTTCTGTTTGTCAGTATCTATATCATGCTGCTTAAACCTACAACATAACTCACAGAGTGCAGCAATTTTATGAAATAGCACAATATGAAACCAGCTCAATAAAGCCAGGTTCGATTTTGTAAACTTGAGTGTGCACGAAACTACAATGCAAAAAATTCAAGCACCaataaaatgaagtgaaataatTGAAGTAATGTAGGCTAACACTTAACTGGGTTTCTGTTATTGCAACtgtaattttaaacattgtacaAATTGTACAGGTCATCTCGGACACATGAAAATGATATACTCACAGAGACAAACACctaagtataaaatataaagcagtGTAATAGTTACTAAAAAAGGACATGCCTTATTGCTAAagcaatttttgcttttttttttttaaatcgcaCTGTACCACaacttgttctgagaaatgtaatttgcataaaTTATTCAAGTTAGAGAAATATTCACACTTttcaattctaaaataaaacgAAGTCTTCTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K23362 MPPE1, PGAP5; ethanolamine phosphate phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019284 True 3539 mRNA 0.41 7 12413154 12423320
TU41125 False 1230 lncRNA 0.41 4 12414106 12417819

Neighbor

gene id symbol gene type direction distance location
AMCG00019279 piezo2 coding downstream 274547 12078562 ~ 12138607 (-)
AMCG00019278 NA coding downstream 359936 12052660 ~ 12053218 (-)
AMCG00019277 apcdd1,LOC107383547,LOC100712112 coding downstream 458695 11936104 ~ 11954459 (-)
AMCG00019266 LOC106596660,LOC106569828,LOC100697261 coding downstream 638837 11758115 ~ 11774317 (-)
AMCG00019256 NA coding downstream 1084795 11283571 ~ 11328359 (-)
AMCG00019288 NA coding upstream 19368 12442688 ~ 12445186 (-)
AMCG00019286 usp14,LOC106569325 coding upstream 31759 12455079 ~ 12463992 (-)
AMCG00019287 rock1,LOC106569322 coding upstream 42806 12466126 ~ 12504550 (-)
AMCG00019291 NA coding upstream 177213 12600533 ~ 12613847 (-)
AMCG00019292 abhd3 coding upstream 192827 12616147 ~ 12635259 (-)
G32825 NA non-coding downstream 45928 12366786 ~ 12367226 (-)
G32786 NA non-coding downstream 346102 12062278 ~ 12067052 (-)
G32784 NA non-coding downstream 352903 12059624 ~ 12060251 (-)
G32779 NA non-coding downstream 411989 12000950 ~ 12001165 (-)
G32773 NA non-coding downstream 433881 11930504 ~ 11979273 (-)
G32844 NA non-coding upstream 29277 12452597 ~ 12453627 (-)
G33030 NA non-coding upstream 680633 13103953 ~ 13106250 (-)
G33070 NA non-coding upstream 832043 13255363 ~ 13257313 (-)
G33076 LOC104962440 non-coding upstream 888183 13311503 ~ 13311800 (-)
G33092 NA non-coding upstream 1209966 13633286 ~ 13633502 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 527583 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 2979040 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 3511276 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 5728853 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 7426770 4941059 ~ 4986384 (-)
AMCG00019312 NA other upstream 745116 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 1238796 13662116 ~ 13665230 (-)
G33163 NA other upstream 2068571 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 2528522 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 3269162 15692482 ~ 15721452 (-)

Expression


Co-expression Network