AMCG00019287 (rock1,LOC106569322)


Basic Information

Item Value
gene id AMCG00019287
gene name rock1,LOC106569322
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12466126 ~ 12504550 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019287
TTTCAGGATGGTTTGGACGCTTTGGTTTATGACCTGGACTTCCCAGccttaagaaaaaacaaaagtatcgACAACTTCTTGAATAGATaTAAAGACACCATCAGTAAAATAAGAGACCTGCGCATGAAAGCAGAGGATTATGAAGTGGTTAAAGTAATTGGCAGAGGTGCCTTTGGGGAGGTACAACTGGTAAGGCATAAGTCTACAAGAAAAGTGTACGCCATGAAACTCCTCAGCAAGTTTGAAATGATCAAGAGGTCAGATTCGGCTTTCTTCTGGGAAGAGCGAGACATCATGGCCTTTGCTAATAGCCCCTGGGTAGTTCAGCTCTTCTATGCTTTTCAAGATGACCGCTATCTGTATATGGTGATGGAGTATATGCCAGGGGGTGACTTGGTCAATCTAATGAGTAACTACGACGTGCCTGAGAAATGGGCCAGGTTTTACACCGCCGAGGTAGTGCTTGCCCTGGACGGCATCCACTCCATGGGCTTCATTCACAGAGATGTGAAGCCGGATAACATGTTGCTCGACAAAGCTGGCCATTTAAAGCTTGCAGATTTTGGGACCTGCATGAAAATGAATCaggaCGGTATGGTACGATGTGATACAGCAGTGGGAACACCTGACTACATTTCTCCAGAGGTACTAAAATCGCAAGGAGGAGATGGTTACTATGGCAGGGAGTGTGACTGGTGGTCAGTGGGAGTCTTCCTGTATGAAATGCTTGTAGGAGACACACCTTTCTATGCAGACTCACTGGTGGGAACATACAGTAAAATCATGAACCACAAGAACGCCCTGACATTCCCAGATGATAGCGAAATCTCAAAAGATGCAAAAAACCTTATATGTGCTTTCCTGACTGACAGGGAGGTGCGATTAGGCCGCAATGGAGTGGATGAAATCAAGCGGCACCCTTTTTTTAAGAACGATCAGTGGACGTGGGAGAATATTAGAGAAACTGCAGCCCCTGTCGTGCCCGAGCTCAGCAGTGACATTGACACTAGCAACTTTGACGATATCGAGGAGGACAAGGGAGATGAGGAAACCTTCCCCATACCAAAGGCTTTTGTTGGCAACCAGCTACCTTTTGTGGGATTTACATACTACAGCAGCCATCAGTTTGTTCGTGGCACCAGCACCAAGTCAAGTGACAAGCGAAGCAGTTCTGCCAAGGAAGATAAAAGCCATCTTGAAAATCTTCAGAAACGGATTTACCAACTGGAGGAGCAACTCAATAATGAGATTCAGATGAAGGAGGAAATGGAACAGAAGTGCAGGACTTCAAACACAAAACTGGACAAGATTATAAAGGATCTGGATGAAGAGACAAATCTAAGGAAAAATGTGGAGTCCAATGTATCACTTCTGGAGAAGGAGAAAATGTTGGCgcagcacagagctgcagaataCCAAAGAAAGGCCGACCAGGAGGCAGAGAAGAGGCGCAATGTGGAAAATGAggtgtcgACTTTAAAAGAGCAGTTGGAGGACATGAAGAAGAGAAGCCAAAACTCCCAAATATCTAACGACAAGATAACGCAGCTCCAGAAACAATTGCAGGAAGCCAATGACCTGCTGAGGGTGGAGTCGGACACGGCGGCCAGGCTGCGGAAGAGCCACACGGAGATGACCAAGGCCATGAGCCAGCTGGAAACCATGAATAGAGAGCTGCAGGAGAAGAGTCACACCATCAACAACTCCAGACAGCAGCTGGAGAAGGAGGTGTTTCAGCTGCAGGCCTCGCTGGACTCTGAGAGAAGGAACTGGAGCGAGGGCTCAGAAGAGATCAGGGAGCTGCAAGGGCGCATAACTGGTTTGCAAGAAGACATTAAAAATCTCAAACTTAACCTTACGAAAGTGGAAGCAGAGAAGAAACAAGCCCAGGAGAGAAGCAATAATCTGGAGAAGGAAAAGAACAACTTGGAGATTGACCTGAATTACAAGCTGAAGACTCTACAGCAGAGACTGGAGCACGAGCTGACCACCAAGGCCCGGCTCACAGACAAGTACGAGTCCATAGAGGAGGCCAAGTCAGCGGCCATGCAAGCGCTGAGCCCAGTGTCTGCCCCCACAGCAGTGGAGCAGAAGGTGTCCGAGGAAAGCACGGCGAGGATGAAGGCAGAGAACCGTGTGGTGGAAGTGGAGAAGCAGTGCTCCATGCTGGAGTTTGACCTCAAGCAATCTGTGCAGAAGATCGAGCAGCTCATGAAGCAGAAGGAGAGGCTTGAAGAAGAGGTGAGGAGTCTGCGGGTCCAGCTGGAACAGGAGTCCAACAAGCGCATCGTGGCTCAGGGTGAGCTCAAGTCACGGGCCATGGAGGCTGACAGGATGAAGGGCTCGGAGAAGCAGCTCAAACAAGAAATCAACAGTGCCCTGGAGACCAAGCGGTCCCTGGAGTTCCAGCTGGCTCAGCTCACCAAGCAGTACCGGGGGAATGAGGGTCAGATGAGAGAGCTACAGGACCAGCTTGAAGCTGAACAGTATTTTTCGACACTATACAAAACTCAGGTCAAAGAGTTAAAGGAGGAAATAGAAGAGAAGAACAAACATATCCAGGACACACACCAGAAGGTTCAAGAACTCCACAACGAAAGGGACTCTCTGTCGGCCCAGCTGGACTTGACAGTGACCAAAGCTGAGTCGGAGCAGCTGGCGCGTGCGCTACAGGAGGAGCAGTATTTTGAGCTCAGCCAGGAGAGCAAGAAGGCAGCAGCGCGCAACAAGCAAGAGCTCAGTGAAAAGGAGAGCACCATTGCTTTGCTTGAAGAATCCAATAAAACGTTGACCAAAGATGTGGAAATCCTCACCAAGGAGAAGGCAGATCTTGATGAGAAGATACGGACCCAGGAGCAAGAGTTTGCTGCCCAGAAGGAAGAGAGAGTGAATTCCATTAAGGCAAACTACGAGAAGGTCTTGAACACTGAGCGGACTCTCAAAACACAGGCGGTGAACAAGCTGGCCGAGATCATGAACCGCAAAGACATGAAGCTGGACCAGAAGAAGAAGGGCAGCACAGCAGACCtgaggaagaaggagaaggaaaacCGGAAGCTACAGTTGGAGCTGAACCAGGAGAAGGAGAAGTTCAACCACATGGCCATCAAGTACCAGAAGGAGCTGAGTGAAATGCAGGCGCAATTGTCTGAGGAATGCACGTACCGCAATGAGCTTCAGATGCAGCTGGACAGTAAGGAGAGTGACATCGAGCAGCTGAGAGAGAAGCTCAATGACCTGCAGCTGCGCATGGACAACTCGAGTGTGGCCAGCCTCCAGACCGACGAGACAGACGGCAACATAGCAGAATCAAGACTGGAAGGGTGGTTATCAATACCTAACAGAGCCAATATAAAACGATATGGCTGGAAGAAGCAGTATGTGGTGGTGAGCAGCAAGAAGATCCTGTTCTACAACGATGAACAGGACAAAGAACAGTCGAACCCTTCTATGGTACTAGATATTGACAAACTCTTCCACGTGCGCCCCGTCACCCAAGGCGATGTGTACAGAGCAGAAACTGAGGAGATCCCCAGGATATTTCAGATCCTGTATGCCAATGAGGGAGAGTGTCGAAAAGAAGCGGACATGGAATCGGGACACCAAGGCGACAAAACAAATTGCTTGCCGCACAAGGGCCACGAGTTCATTCCCACGCTCTACCACTTCCCCACCAACTGCGAGGCCTGTGCCAAGCCCCTGTGGCACGTGTTCAAGCCCCCGCCAGCGCTCGAGTGCCGCCGCTGCCATGTCAAGTGCCACAAGGATCACTTGGACAAGAAGGAGGATGTCATTGCTCCTTGTAAAGTGAACTACGATGTAACCTCGGCTCGGGACATGTTACTGCTAGCACTGTCTCAGGATGAGCAGAAGAAATGGATTGGGCACCTTGGGAAGAAGATCCCCAAGACTCCCCCTTCCTCCTTCATGAGGGCCTCCCCGCGCACCATGTCGACTAGATCTGTAAACCAGTCCTTCCGCAAAAATCCCAAAAGCATAACGGGCAAACCAAGGAAGGTGGAAGGCAAGACCAGAAACCACAGCGGGGTGTGCACTCCTCACAGCAGCGACATGAAAGACGGCTGA

Function

symbol description
rock1 Predicted to enable Rho-dependent protein serine/threonine kinase activity. Involved in epicardial cell to mesenchymal cell transition; negative regulation of adherens junction organization; and positive regulation of stress fiber assembly. Acts upstream of or within regulation of cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasmic stress granule and cytoskeleton. Is expressed in forebrain and hindbrain. Orthologous to human ROCK1 (Rho associated coiled-coil containing protein kinase 1).

NR:

description
PREDICTED: rho-associated protein kinase 1 isoform X1

GO: NA

KEGG:

id description
K04514 ROCK1; Rho-associated protein kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019287 True 4086 mRNA 0.50 32 12466126 12504550

Neighbor

gene id symbol gene type direction distance location
AMCG00019286 usp14,LOC106569325 coding downstream 2134 12455079 ~ 12463992 (-)
AMCG00019288 NA coding downstream 20940 12442688 ~ 12445186 (-)
AMCG00019279 piezo2 coding downstream 327519 12078562 ~ 12138607 (-)
AMCG00019278 NA coding downstream 412908 12052660 ~ 12053218 (-)
AMCG00019277 apcdd1,LOC107383547,LOC100712112 coding downstream 511667 11936104 ~ 11954459 (-)
AMCG00019291 NA coding upstream 95983 12600533 ~ 12613847 (-)
AMCG00019292 abhd3 coding upstream 111597 12616147 ~ 12635259 (-)
AMCG00019303 NA coding upstream 434457 12939007 ~ 12965910 (-)
AMCG00019302 NA coding upstream 481197 12985747 ~ 13006328 (-)
AMCG00019301 ankrd29,LOC106613857 coding upstream 504212 13008762 ~ 13018024 (-)
G32844 NA non-coding downstream 12499 12452597 ~ 12453627 (-)
G32825 NA non-coding downstream 98900 12366786 ~ 12367226 (-)
G32786 NA non-coding downstream 399074 12062278 ~ 12067052 (-)
G32784 NA non-coding downstream 405875 12059624 ~ 12060251 (-)
G32779 NA non-coding downstream 464961 12000950 ~ 12001165 (-)
G33030 NA non-coding upstream 599403 13103953 ~ 13106250 (-)
G33070 NA non-coding upstream 750813 13255363 ~ 13257313 (-)
G33076 LOC104962440 non-coding upstream 806953 13311503 ~ 13311800 (-)
G33092 NA non-coding upstream 1128736 13633286 ~ 13633502 (-)
G33132 NA non-coding upstream 1577165 14081715 ~ 14081918 (-)
AMCG00019284 NA other downstream 42806 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 580555 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 3032012 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 3564248 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 5781825 6680625 ~ 6684301 (-)
AMCG00019312 NA other upstream 663886 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 1157566 13662116 ~ 13665230 (-)
G33163 NA other upstream 1987341 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 2447292 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 3187932 15692482 ~ 15721452 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015137 rock1 coding NC_007113.7 CM002886.2 2818645 ~ 2900825 (+)
grasscarp (Ctenopharyngodon idella) CI01000098_00322578_00362784 ROCK1 coding CI01000098 null 322425 ~ 362784 (-)