AMCG00019290


Basic Information

Item Value
gene id AMCG00019290
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12572727 ~ 12598517 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019290
TGGCACTGATAATAAACcattcctttctctctctctgcaggtgctAAAGCTCTGTCAACAAGGAGGGTAACGAGACGGCATGCTATGAAGTGGAGGTGAACATGTTCCAAGAAGGTTAAGATAAACACACAAGACAATGGGGAATTCGTACGCAGGGCAACTGAAGTCGGCTCGCTTCGAGGAGGCTCTTCACAACTCCATCGAGGAGTCCCTGCGCTCCAACAGCACTGCCCCGCGGCCGGTCTTCTCGCAGCTCTACCTGGACCCTGAGCAGTACCCTGGCACTGTGGAAGATGTGAAGCCAAAGATGGAAGGCCTTGATAAGGAAATCTCCCTACGTTACCCAGAGAGGATAAGCCAGGAGATCGCGAATGGTCCGGTCACCAATGGCACAGAGAATGAAGAGGAGGCGGAAGATGAGGACCTGTCTGACACGAGCAGCCCTCCCATTCCCTACCTGCAAAGGCCTGCTCCTGAAGGCTCCTGCACAATGGATGGATTCTGCCAGGCGGGGAAAGACCTGCGTCTGGTGTCTGTGGGCATGGATCAGATTGAGGTCCAAACTGGGTTTGAGCTGGTCGGGGCCAAGTCACCCAACATCCCCGAGCACATACTGGTCTGCGCAGTGGACAAGAGGTTTCTGCCCGATGACAATGGGAAAAATGCACTTTTAGGATTTTCAGGAAACTGTGTAGGCTGTGGGGAGAAAGGCTTCCGGTACTTTACAGAGTTTTCGAATCATATCAACCTGAAACTGGCCACCCAGCCAAAGAAGCAGAAGCACTTAAAATACTACCTGGTGAAGAACTCTCAGGGTGCTCTGTGTAAAGGACCCCTCATCTGCTGGAAAGACTGTAAAACAAGGCAGTCATGTAGCAGTACATCTTCTGCCAAGCCTAGGTCTTCTACGTCCCCCACTGCCAAGCAAGAGAATGGAGCGAGCAACGGCCACAACTCGCCGCCATTCACAGCTCCCACTGCCCTGCAAGTTAATGGCTCCGCTAATGGCATGAGCAACGGCAGCCGGGTGAATGTGCTGAGCCCCTCCCAGCCGGTCTCTACAGGGGCCGTGACCCAGAGCCCTGGCTACCGCAGCACTGACGCAGCTGCCATGAGCTCTGGCCCTCCCAAGAAACGTCACCGCAGCTGGTACCCGGGCTCTCCTATGCCAGTTCCTGCAACTGCTGTTCCTGTGCCAGCGATCCGGCCTGTAATCCGGTCAGCAGAGGCTCTGCTACCTGCCCCTGCTCCTCCGCCAACAGTGTCCGGCGTGCTGCAGCCCCAGGCCATCCCCGCAGGAGAGACCGTCATTGTGCCGGACAATCTGCTCAACACCTCCGCAGTCAGGCCTGTTATTCTCATTGGTTATGGCACTTTACCTTATTTCTATGGCAATGTGGGAGATATAGTAGTCAGTCCACTTCTGGTGAGCTGCTTCAAGAACCCCCAGCACAACAGCAGGACACTAGAGAAGCTGGGAATGTCCACCAGTCAGCTCCTGAGTGTGGAGAACATGATTTTACTCACCCTGCAGTATTTGGTGCGATTAGGCTCAGACCAGATCCCTCTGCGGGAGGAGTTTGAGCAGATCACCTTAAAGGCCATGCAAGGTGGGCCGTCGCTGAAGGAGCAAGCACCCCTGCATTTGGGCTCCAGTGTGACCTCCATCTCGCCCGCTCAGTTGCCCTGGCTGGCCCGCCTCACCGCCAGCGTCTCGCGGGACTCCGTACAGGTCCTCATCACCCCCAATTCCCTGGGGGAGGGCATCTCCGAGTCTCTGCGCTCCCTCAGCGAAATGCCGCCACAGCAGAGCCTGCCGGACTATGTCGTTGTCATCTGCTCCTCCAAGACTCGGGGCAATGAGTTTTGTGTTCTGGTCTTAGGCAAGTATCAGTCCAGAGCTCTTGCCGAAAGCATGCTTACAACCAACGAGTTCCTGAAGGAGATCAGCTATGAGCTCATCACTGGCAAAGTCAGTATCCTTGCCTCCCATTTCCGAGCTACTTCTTTAGGAGATAATTTGGACAAGCAGCTGCTGAGATTCCAGCAGAGAAGAGGAGATCAGGTCACTCTGCCTTTCCAGGGGGATGTCAGTGACTGCGTTCAGTCGCACGAGGCTGCTGGCATGGTGCCGACGCCAGACACGGACTCCTCAGGAAGTGAAGTGTTCCAGATCTACCCCCCACAGTTGAACGTGGCCCGCAGACTGCTGTCCCAGGTGTGCTCCATAGCGGACTCGGGCAGCCAGAGCCTGGACCTCGGACGTTTCTCCAAGGTGGACTTCCTCATTTTGGTTGCACCTTCTGAGGTCTTGGTGCATCAGACAGCACAGCGAATCAGACAATCAGGAGTTCTGCTGGATCTGGGTCTGGAGGATACGACTTCCGCCCTCCAGAAATCTGACAGATATGTTGTTCGTTTGGATAACGACGTCCACGCAAAATTTGAGGCATTCATGAGAAAGGTCAAGCAGAATCCATACACCCTGTTTGTCCTCATTCATGACAACTCACACGTGGACCTGACCAGCCTTATCTCAGGGTCGGTGTCTCACGGGGAGCTGCAGGGCCTGGCAGACAGGATGATCAACTGCAGGGAGGTCCTGGAGTCGGTCAACCTGCTGGTGCTGCAGGTCAGCTCCTTCCCCTTCACGCTGCAGACACAGCAGTCCCGGATCAGCATCTACAATGAAGTGCACTGGCCAGCCCCCGACAGCCTGGTGGAGTCCAGCTCTGAAGAGCATGTGTACTTCGGTCTGAGAGACTACAGCCAGTCTCTGCAGTGGGGCATGGCCAGTCCCGTCCTGCGCTGCGACGACGCCTTCGAGAAAATGGTCAACGCCCTGCTGGAGAGGTACCCTCGTCTGCACAGCATGGTGATCCGCAGCTACCTCCTGATCCAGCAGTACACCGAGGCCATGATGGCGCTGGCGGCTGTCTCCTCCCTGCGGGACCACACAACCCCCGAGACGCTGGGCATCATGGACGACCTCATCAGCGCGCCGGGCAAGGACAAGAGCGGCCGGGGGCACATGCTGCTGATCCGCGTGCCCTCGCTGCAGCTGGCCATGCTGGCGCGTGAGAGGCTAGAGGAGGTGCGCGACAAGCTGGGCCTGCAGTTCCGTTTCGAGGTCATGCTGGGCAGCCCGGCCGCCGAGCTCAGCCTTGCCAAGCACTTCATTGCCAGGCTCAAGGCATGGAGAGGCTGTGAGAATGAGGACTGGGTTCCCCACACCTATGAGGAGTTGGAGGGGCTGCCGTGTATCGTCATCCTCACTGGGAAGGACCCCCTGGGAGAAACGTTCCCAAGGTCCCTCAAATACTGTGACATGAGGCTGATCGACTCCAGCTACCTGACCCGCACGGCTCTGGAGCAGGAGGTGGGGATGGCGTGCACCTATGTGTCGCGCGGGGCAGTGAAGGAGCCGCTGGGGGCGACCGAGCTGGTGGACCAGGAGCAGGACAAGGCCAACAGCAGTGAAAACGACCCCGACGAGCTGCACATCGACCTGGAGAGACCCCAGAGCAACGGCAGCGCTGTCACGGGCACCTCCGGCTCTGTCACAGAGAACGGCGTGAGTTCCTCCAGCGCGGCCGACTCCACCCAGAAGCCGTCCACCTCCAGTTTCCAGAAGGTCGGTAGCAGCGGCAGTGGCAGCACGGGGGAGGAGGGCAACTCCCCGCGGGGCGTGAAGCAGGAGTGCGACTCCCAGGGCAGCCACCTGGCGAGCAACAGCACCGCAGCGGCCCAGCCCTCCTCCTCCAGCACGGcttccacctcctcctcttcctcctcctcctcctcctcccagcgACCCAGTCAGTCCACCCAAGTGGGCCCAAGCCGGATGACCGCCCAGCCCCGCACCGTCATCCTCTCCAGGGCCGCGTACAACCTCCTGGGGGGGGAAAGGGCTGGCCATCTccactcctcctccctcctgccACACGCCGACATGTCCTGGAGCAGCCCCCTGCGCCCGCCCTTCCACAGAGACCTCAGCAGTGCCGAGCAGTCCCTGTATTACCGCGAGTGGACAACGGCCCGGCAGCACCATGCCGACCACAGCAATCAGCCCATTCACAAGGCCACCGGCTTCCACCCCCGCCGCCTGCTGCTCACCGGACCGCCCCAGGCaaTGCACTTAGACTGTGAGGTTGCTGTTTTGCCATTGCAGGTGGGGAAGACCGGAGCCTACCTGCAGTTCCTGCGGATCCTGTTCCGCATGCTGATCCGCCTGCTGGAGGTGGATGTGTACGATGAGCAGGAGCTCGATGTGGGTGAGTGCGGGACGGCTCTGTCCTTCGACGCCAACGCTGCAGCACAGACACCTCCTGCCACCCCCGCCTGCCTGCATTCATTGCAGTGTCACGTGATGTTCAACAGATCCGTCAAAGTCAAGTGTGCTCCTGACACCAGCTTCATGTCATGTTTTTCAGACCTCACAGAAAGCTCAGAGGGGAACCAGCCACTCGGCGACCAGTGGCCAGATATAGAAGTTATCCAAAAGATGCCCTTTAACCTCCTCCCCCGGGATCCCAAGTTCCGTTTCGCCACTCCTGTGTTCACAGAGACGCTGCCGAAGTCTCTAGgtTATAACAAGGAAGTGAAGCGAGAAGTGCCTGCCAAGCGGGAGACTGTGTCAATAATGTTAACCAAATACGCCGCCTACAATACCTTTCACCACTGTGACCAGTGCCACCATTACACAGAGGCCACGCCAGCAACGCAGCTGTCCGACTGCACCTTCCACACCttcaccttctcctcctccatgcTGGGAGAGGAGGTCCAGCTGCACTTCATCATCCCTAAGTCCAAGGAGCAGTACTTCATCTTCAGCCAGCAAGGCAGCCACCTGGAGAGCATGAGGCTGCCCCTGGTGTCTGATAAGGACCCAAGCCTGCTGAAGAGCCCCATCTTCACCCCCACAACTGGGCGGCACGAGCACGGCCTGCTCAACATCTTTCATGCCATGGAAGGCGCCGCCCACCTCCACGTCCTTGTGGTGAAGGAATACGAGATGCCGCTGTACCGCAAGTACTGGCCCAACCACATCCTGCTGGTCCTGCCCGCGGTCTTCAACAACGCGGGTGTGGGAGCTGCCCGATTTATGATCAAGGAGCTCTCCTACCACAACCTGGAGCTGGAGAGGAGCCGACTGGAAGAGCACGGGGTGAAGAGGCAGGATGTGTGGCCCTTCATAGTCATGATGGACGACTCATGTGTCCTGTGGAACGCACACAACCTCCTGGACAGTAGCAGTGAAACAACAGAAGCAACCACCAGCTTCAAGAACCTCTCTCTGAAGGCAGTGCTGCAGCACATGGAGTCCACTCCCAAGATCACCATGTACGCCATGTGTGGAGTGCGGAAATGGAGCAGCCACGTGTCTGCGCGGAGGCCCGACTCTCCATTCTCGCGCTGTCACGTGCATGACTTTGTGATGCTCAATGTTGACCTCACCCAGAACGTCCAGTATGACCTCAACAGGTACTTCTCTGAGGACATTGACTTCAACCTTCGGGCGAACAGCAGTGGACTGCTGATCTGTCGCTTCAACAACTTCAGCCTGATGAAGAAGCACATCCCCTTCGGAGGCCACAAGGACTTTGTCATTAAGCCCAAGCTGTTGGTATCGGAGAACCTGATGTCGGTCAGCCCCTCTCAGTACGTGTGCGCTCCCGACAGTGAGCACATGCTCCTGGCAGCTCCAGCACAGTTCCTGCTCGAGAAGTTCCTGCAGCACGGCAGCTACAAGCTCTTCCCCAAGGCCATCTACAACAACAAGAACCCCGTGCTGTCCATCGATAGCTACCTCAACATCGGCCCAGAGgtgtctgtgtgttacgTGAGCTCCCGGCCTCACTCCGTCAACCTGAACAGCGACGGGCTGGTGTTCAGCGGGCTGCTGCTCTACCTCTGCGACTCGTTTGTGGTGGCCAACCTGCTGAAGAAGTTCAAGTTCCTGAAAGGGGCTACGCTGTGTGTGATCTGCCAGGACCGCAGCTCTCTGCGCCAGACCATTGTGCGTCTGGAGCTGGAGGACGAGTGGCAGTTCCGCCTGAGGGACGAGTTCCAGACGGCCAACTGCAGCGACGACCGGCCGCTGTACTTCCTCACGGGACGCCACATCTGAAAAAGCCTCGCTCCGTCACGTCCGTCTCCCGCTCGCCATCGTCATTGTAGAAGATAATCATAAGCGGAGAACGTGTTCAGCAAGTGCTGGATTACAATCAGTTCCAAAGAAACCCAAGAAGTGGAGCCCGGGGGCCCTGGAGGCTGAACGCGAGGGTGGAACCCAGACCAGAGCTGGCGTCGACATGGAACGCGCTCTGGAACCCGTCCTCTCGATACAGGACAGCTGCCTCCTCCACAAACCTTAAACTGCACTACTTTCGCACAGAAGATGTCTGTAATCGCTTTCTCATAGCAGGCATGTGGAGACAGACCAATCTCTCCGAGCCTGACTGCGGAAGGTTTATTTCCAAGTGTTGTATTCAGTgatgccaaaaaaaaaggacaaatgcTGACAGTATTTACTTGCCCAGCTGCCATAAGCTGGTTTGAATGTTTTCAAAGAGACTCGCATTAAAGGTGTGCGACTCTACAACGATTGTAAACCGAGGCAGATGCCTTTGGTTCTTATACTTACTGTACTTGACATACAGTACATCTCAGGggtttaaaaagagagaaataatagTTTACTTTTATGATGATGGTCTTGTTCTCCGAATGTgaagtgtttctgttttgtattgtgtaaCGTGTATAAATGTCACAGGTCTGAGCAGATGCGGTGCAGGTGCTGGCACACAATCCTTATCGGTCTTTGTCTCCCTCCTCGCCTCGCCCCCCCCAGTGAATGCTCAGTTGCACAGTTCGCCTCCAGAATAGCAGGCCCACAGtaaggaatgtgaaaaatgtctgAAGAATTAAAAGCACAATTTCCCGTGTGTTGCTGAAGAGACGGAGGTACTTTTTAATGATCGTGTCAAGCTTTGTCATGTCCAATTGGGTCTTATCTCATAAATAGTGTTGATTCATAGATTAACACTCTGCCCACCAAGCCAAAGAAACCCACTGACTTAGCTGCTGCTGAATATAATCATTGATCAAATGACACCGTGCCTTCACACAACATCCCAAACCTACCTGAGGCTGTCCGGTTAACTCTGGCTTCACAAACATATTATATTGTTCTTGGTCAGGTGTAATGAAGTCAAATGTACTATTTTGCATAGAGGAAATGTAGTAGTCAGCATCTTCATTTCTGTGGGGGAATTTGATGGCTGATATACAGGGTGGAGATGGTAACGATTACAAAAAAAACCAGTGAAAGCGGATATTGCCTCTCGGCTATAGACTGTGATTGACCAATGCAGGACGAGGCCATAAACAATTACCATCCCATTCGAGAGCTGATGTAATGTTGCTGTGAATCGCATCTGAAACATTGGTCAGATGCACAAAGGAAGATCATCGGGATCCTTGCCAAGAACTCGGCACTCCGATGTACACATGGACACGAATGTTGTTTGCTCgaagcatttctgtttttgcacGCTCGTTATCTGGAAGTGCTGTCTGCTTGCTAGTTTGTCACGACTCGACTGCCTTGGTCTTCCCTCTCCACTTGCCAGCCTTTTCAGCCCTCGTGTTGGCAATTCACTCCTGAACGTGTGGGGGTTTTCATCAATGCCTGGTACAGTGGGCCTTCACATCCCAGGAACCCTCTCTGTACAGGATTTCAGTGCATTAGCCAGACTTACCATTTAAAAACCTTCATTTTCTTccacccattttttttttttttatccgaAAAGGCCTAGGTTCCCCTTCGCTTTGCGATGTGCCTCATTGCATTGCGCAGTCTCACATTGTGCCTCGCACTCTTAAGGCCTCACctgtatatacaaacacaagaaaggctacagacgagaggaggccatcttGCTCATTTGGATTTtagagtatatattttataagtgttgatggagtttttattttttccagttacATGTAGCTAAATCTACCTGAACTTCCTATGATTCTGTGAAATATAATGTAGGGGTTGTTCTGAGAGAGATCCACAAGCTTTCATCACTAGGACAAAATAACTTGGTTTgataaatacagcaaaatatAGGGTTTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019290 True 8161 mRNA 0.55 31 12572727 12598517

Neighbor

gene id symbol gene type direction distance location
AMCG00019280 thoc1,LOC106600433 coding upstream 118355 12446933 ~ 12454372 (+)
AMCG00019283 impa2 coding upstream 131876 12430978 ~ 12440851 (+)
AMCG00019282 gnal,LOC103396682,LOC106520735 coding upstream 160454 12407378 ~ 12412273 (+)
AMCG00019281 gnal,LOC107554377,LOC107732066,LOC107667176,LOC106520735 coding upstream 246889 12324271 ~ 12325838 (+)
AMCG00019285 NA coding upstream 285018 12286918 ~ 12287709 (+)
AMCG00019289 mib1 coding downstream 43447 12641964 ~ 12671029 (+)
AMCG00019293 mib1,LOC106600429,LOC107747519,LOC107691191,LOC107550435,LOC107681781 coding downstream 110048 12708565 ~ 12722210 (+)
AMCG00019295 NA coding downstream 169437 12767954 ~ 12778615 (+)
AMCG00019297 rbbp8,LOC107732059 coding downstream 260463 12858980 ~ 12873054 (+)
AMCG00019300 NA coding downstream 283464 12881981 ~ 12882526 (+)
G32778 NA non-coding upstream 571563 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 934847 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1124476 11377956 ~ 11448251 (+)
G32549 LOC103376870 non-coding upstream 2064664 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 2463577 10108906 ~ 10109150 (+)
G32892 NA non-coding downstream 10884 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 14768 12613285 ~ 12613926 (+)
G33075 LOC104962440 non-coding downstream 712897 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 1035185 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1554285 14152802 ~ 14160703 (+)
G32539 NA other upstream 2163230 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 2944065 9369898 ~ 9628662 (+)
G32286 NA other upstream 3033516 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3223908 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4188135 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1840736 14439253 ~ 14486706 (+)
G33283 NA other downstream 2565831 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2956302 15554819 ~ 15626955 (+)
G33406 NA other downstream 3445425 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4850803 17449320 ~ 17452659 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015269 greb1l coding NC_007113.7 CM002886.2 11685742 ~ 11833356 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_02834634_02863535 GREB1L coding CI01000004 null 2832744 ~ 2863598 (-)