AMCG00019293 (mib1,LOC106600429,LOC107747519,LOC107691191,LOC107550435,LOC107681781)


Basic Information

Item Value
gene id AMCG00019293
gene name mib1,LOC106600429,LOC107747519,LOC107691191,LOC107550435,LOC107681781
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12708565 ~ 12722210 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019293
ATGGTGCGTTTCCACAGTGCCATGCGAGTCCTGCTCTCCAAGCTCCCCAGGCCCTGGATCGTGGACGAGAAGAAGGACGATGGATACACTGCCCTGCATTTAGCGGCCCTCAATAATCATGTGGAAGTAGCGGAGCTGCTAGTGCACCAGGGTAGCGCCAACCTGGACATCCAGAATGTGAACCAGCAGACAGCCCTGCACCTGGCCGTGGAGCGCCAGCACACACAGATCGTCAGGCTGTTGGTCCGTGCTGAAGCCAAGCTGGACGTACAGGACAAGGACGGAGACACGCCTCTCCACGAAGCCCTGAGACACCACACCCTCTCCCAGCTGCGCCAGCTGCAGGACATGCAGGACGTGAGCAAGCTGATAATGGGCCTGGGAACCCAAGGCGCTGAGAAGAAGAGTGCCGCCTCCATTGCCTGTTTCCTAGCCGCCAACGGAGCTGACCTCACCATCCGCAATAAGAAGGGCCAGTCCCCGCTTGACCTCTGCCCTGACCCAAGCCTCTGCAAGGCCCTGGCCAAGTGTCATAAAGAGAAGTCCAGCGGCCAGGTGGGCTCTCGCAGCCCTTCGCTGATCAGCAACAACTCGGAGACGCTGGAGGAGTGCATGGTGTGCTCGGACATGAAGAGGGACACGCTGTTCGGCCCCTGCGGCCACATCGCCACCTGCTCTCTCTGTTCGCCACGGGTCAAGAAGTGTCTCATCTGCAAGGATCAGGTCCAATCCAGGACCAAGATTGAAGAATGTGTGGTATGCTCAGACAAGAAGGCAGCTGTGCTCTTCCAACCTTGTGGCCACATGTGCGCCTGTGAGAACTGCGCCAGCCTGATGAAGAAGTGCGTGCAATGCCGGGCCGTGGTGGAGAGGAGAACTCCTTTCGTTATGTGCTGTGGCGGGAAAGGTATGGAGGATTCCTCTGATGATCTTACCAGCGGAAACATTCCTGCTATGCAGAGAGACAAGGACAATACGAATGTCAACGCAGACGTGCAGAAACTgcaacagcagctgcaggacaTCAAGGAGCAGACGATGTGTCCGGTCTGCTTGGATCGTCTGAAGAACATGATCTTCATGTGTGGCCATGGCACGTGCCAGCTGTGTGGAGACCGGATGAGTGAGTGTCCGATCTGCCGCAAGGCCATTGAGCGACGCATCCTCCTCTATTAG

Function

symbol description
mib1 Enables identical protein binding activity and ubiquitin-protein transferase activity. Acts upstream of or within several processes, including animal organ development; nervous system development; and tube morphogenesis. Located in endocytic vesicle and perinuclear region of cytoplasm. Part of protein-containing complex. Is expressed in nervous system; neural tube; and pectoral fin. Used to study epilepsy. Human ortholog(s) of this gene implicated in left ventricular noncompaction. Orthologous to human MIB1 (MIB E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MIB1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019293 True 1176 mRNA 0.57 9 12708565 12722210

Neighbor

gene id symbol gene type direction distance location
AMCG00019289 mib1 coding upstream 37536 12641964 ~ 12671029 (+)
AMCG00019290 NA coding upstream 110048 12572727 ~ 12598517 (+)
AMCG00019280 thoc1,LOC106600433 coding upstream 254193 12446933 ~ 12454372 (+)
AMCG00019283 impa2 coding upstream 267714 12430978 ~ 12440851 (+)
AMCG00019282 gnal,LOC103396682,LOC106520735 coding upstream 296292 12407378 ~ 12412273 (+)
AMCG00019295 NA coding downstream 45744 12767954 ~ 12778615 (+)
AMCG00019297 rbbp8,LOC107732059 coding downstream 136770 12858980 ~ 12873054 (+)
AMCG00019300 NA coding downstream 159771 12881981 ~ 12882526 (+)
AMCG00019296 cables1 coding downstream 183264 12905474 ~ 12916716 (+)
AMCG00019298 cables1 coding downstream 204572 12926782 ~ 12928334 (+)
G32893 NA non-coding upstream 94639 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 96032 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 707401 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1070685 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1260314 11377956 ~ 11448251 (+)
G33075 LOC104962440 non-coding downstream 589204 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 911492 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1430592 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 1563355 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1769682 14491892 ~ 14492206 (+)
G32539 NA other upstream 2299068 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3079903 9369898 ~ 9628662 (+)
G32286 NA other upstream 3169354 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3359746 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4323973 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1717043 14439253 ~ 14486706 (+)
G33283 NA other downstream 2442138 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2832609 15554819 ~ 15626955 (+)
G33406 NA other downstream 3321732 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4727110 17449320 ~ 17452659 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location