AMCG00019294 (LOC107599736)


Basic Information

Item Value
gene id AMCG00019294
gene name LOC107599736
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12970975 ~ 12977312 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019294
CTCCGCCGTATCGGTGGTTCCTGCTTTTTCTGCTGGTATTATTTGCCTATTTTGGCAGAAGAaccttattttttaatctttatttttttgccaattgctgtggtatatatttttgtatagtgTTTATTATTTCGATTCTGTAAAGagtcatattattttataacatttgtttacaaGCTCTCTATCTGGAGAGCTCTAAACTTGCCCAGACTTGTCATTGATCGTGCTGACTACAGTCAAGcgagtatttattattaactatttatttatttgtgaaacaaGTACGCACTTCGTCGATTGTGAACATGGATCAAATTGGAATCACTGCCGAAGAAAACGAGACTGGCTCCGTATGGAAAACCAAGAGCCCATGGGGCGCCCCTAAAGCAGTGGTGACCCCCTGCTCCCTGACAGAGGTGATGAGTGAGCAGCTGGCCGTCCAGCTTGATGAGGAGCTGTCCGCTTTCCCTATCTGTCCTGATGTTAACGAGCCCCTGATCACTGGAGATAATATTGACACATCCAGCGATCTGAAGCTGGCTCAGATGCTGCAGATGGAGTTTGACAGGGAGTTCGACACACAGCTGCGCCGTGAGGAGAAGAAATTCAATGGGGACAGCAAGGGTAATTCCAGTTGGTCTTCTGTTCTTGTTAACGCAGTGGCGTTTCTGAACAGCCGGCTGACTGCAGGTTTGTGTTTCTTCTCGGCTGCAGTGTCCATTTCCTTTGAGAACTACCGGATGGTACATCCCTATGACGACACCGACAGCTCGGAAGATGAAGTCGATTGGCAGGACACGCGTCATGATCCCTACGGGCCTGATAAGCCCACGACCAACCCAAGAAAGGGTTTTGCAGGCAAGGGCAAGAACATCACCACAAAGCACGACGAGGTGGTGTGCGGCAGGAAGAACACGGCACGCATggaaaattttgcACCTGAAGTCCAGGTCGGAGATGGAATTGGCATGGACCTCAAGCTGTCTAACCAGGTGTTCAATGCCTTAAAGCAGCACTGCTACTCTGAGCAGCGCCGTAGTGCCCGGCTACATGAGAAGAAGGAGCACTCCACTGCGGAACAAGCAGTGGATCCCAAGACCCGCTTGCTGATGTATAAGATGGTGAATGCGGGGATCCTGGAAAATATCCACGGCTGCATCAGCACAGGGAAAGAGTCTGTGGTTTTCCATGGCAAAGGAGGAAGtATGGAGGACAAAACTGTCCCAGAGGAATGTGCTTTAAAAGTGTACAAGACTACTCTGAATGAATTCAAGAACCGGGACAAATATATCAAAGATGATTATCGATTCAAGGAGCGTTTCAGCAAGCTGAACCCGCGGAAAATCATCCGAATGTGGGCTGAGAAGGAAATGCACAATCTTGCTAGAATGCAAAAGGCAGGTATTCCTTGCCCTGAAGTTATTATTCTTAAGAAGCACATTTTGGTCATGTCCTTCATTGGAGAGAACCAAGTCCCTGCACCAAAGCTGAAGGAGATGAGGCTGAGCAGTGAGGACATGAAAGGGGCCTATTTCCAGGTGCTACATATGATGCAACAGTTGTATCAAGAATGTAACCTTGTTCACGCTGACCTGAGTGAATACAACATGCTGTGGCACGATGGGAAGGTCTGGCTGATTGATGTGAGCCAGTCTGTGGAGCCCACTCACCCCCATGGGCTGGAGTTCCTCTTCAGGGACTGCAGAAATGTGTCCACTTTCTTCCAGAAAGCTGGAGTGTCCGAAGCAATGAATGTTTATGACCTTTTCAACGCTGTATCTGGACTGGAAGTCAAGGCAGATAGTGAGGCTGAATTTATTGCACAGATTGAACTTCTGGAGAAGATGAATGAAGACCATGTGCAAAAGCATGGGAAAAAAGCTCCCTCTTACTCAGATGATGGGGGTCCTCCAATAATAAATGATGATTAGTGATTacataacaagaaaacaaactatcaAATGTAAAGAATATTGTTTGGTGCTTTTCGTGTATGGGCTGAACAACACAATGTAACCACCACTGGTCAGTAATCTGTATGAGAGGAAGTGACAGTAATGGGGTGGAGATGAATAGCCATTGTCAGGCAGCTTTGATTGGTGAAAAAGGGCTAAAAACAGAGCTGTTTGAATCTTGCTGTCTCTAAATCCCATGTTATTGCAGTCGTAGGAAGCAAAAAGTGATGTTTAAGGTGTCTAATGGGCTTTTAATTACTCGCTCTATTCAAAGTTTACCTATTTATTACAATAAGGTATTTAATCGCAATTTGGAAAACCAGCTTAGATGCCTTACTATAAAGTATTTGTAAACCAACTCATGGTTCTTCATTGTGGTTTCTAAGGAACTGGTCTCTATCtgcctttttaaataacttattgTTTTGATGATTTGAAACGGATAGTAGTGATGCTTGTTTGTAATCATTTCACGtaactgatttttaaaaatccaagttaaaaaaagaaaacgaaaacCCTGTGCTGAACCATTAAATTATCAGGAATACTACAGTGCATGTAAAttacatgaatattaaaaagtgtGAAACATATAACAATCATCGCTGTTTAAAACAGTAGGCAGTTCACTAGATTTATTCCTAGTATGCACTGAAACCCTCGTCACCATTGTTGAGATCTGTGGGAAATGTGTCCCATCACACTGTCAGTGCTTGTGAATTGTCCTGGGTGAtgaagttaaagaaaaataaataaatacatttccttgattgtatgattgatttattcttAAACTTACACAGTAACATATCCGGAAATAGTTGATGTTTTATCAGGATACTCGCTGAAATAGAGGCAAGAGGAATGGAACTGaagtttattgtattaatttaatttcatcatCTTCATATCCTGTCTTTTccaaattaatatgtaatgcATATGGAACTGaatcatattttagttttataattCTATAGCCAATCAGGATTGAAGATTTACAGCCATTGGAGCAgatggttttattaaaatataattatataacatCCAGTACTTGTCAGTCATTCCTATGACTAATCCTCGCTTTTTTGTGCTGCACAGTGATTCCCCATAGCTGAGTGGGGAGAATTAAGCTTTCAATAAAAATCTTGTCAGATGTATTGTGAGATACACTCTATCTTTGGATTGTGAGTAGCGCTTAAAATTTTACTCTGCACTGTCACTGTGTTTGGTTACTCCATGTAGTTACAGGAAGTATGAGGGTAAATTCATTCCCATCCCTGTTTTCTGTATCCTAAGCAGCTCAGTTTCTACTGACATGAAACCACAACAAAACCAAGAGATTGATcgcagatttattttaaaagataactACATAACAGTCATACAGTACCTCTATGTAAAGCAATGCTTATCCTTCACTCCTTTTGCTTGTAAAGGATTACACGACAGTAAGACAGACAAAGCCCTGTTCTTGCCAGCTACGCTCAGTGTTTTGCACCAAGGTGGAGCTCTGATACACAACGGAGCTCCCACCCACTTTCTCACATTCCAGGGTAATGACTATGGTTCGCCACACCCATACCTTTCTCAAAGGCAGTAAAATC

Function

NR:

description
PREDICTED: serine/threonine-protein kinase RIO3-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08872 RIOK3, SUDD; RIO kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019294 True 3565 mRNA 0.42 12 12970975 12977312

Neighbor

gene id symbol gene type direction distance location
AMCG00019298 cables1 coding upstream 42641 12926782 ~ 12928334 (+)
AMCG00019296 cables1 coding upstream 54259 12905474 ~ 12916716 (+)
AMCG00019300 NA coding upstream 88449 12881981 ~ 12882526 (+)
AMCG00019297 rbbp8,LOC107732059 coding upstream 97921 12858980 ~ 12873054 (+)
AMCG00019295 NA coding upstream 192360 12767954 ~ 12778615 (+)
AMCG00019299 clg21h18orf8,LOC106916022,LOC103129440,LOC101473408,LOC104932202 coding downstream 987 12978299 ~ 12985783 (+)
AMCG00019305 NA coding downstream 29797 13007109 ~ 13030766 (+)
AMCG00019304 NA coding downstream 54340 13031652 ~ 13112713 (+)
AMCG00019307 LOC106584358,LOC106613856 coding downstream 164299 13141611 ~ 13149184 (+)
AMCG00019308 NA coding downstream 176508 13153820 ~ 13162062 (+)
G32893 NA non-coding upstream 357049 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 358442 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 969811 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1333095 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1522724 11377956 ~ 11448251 (+)
G33075 LOC104962440 non-coding downstream 334102 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 656390 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1175490 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 1308253 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1514580 14491892 ~ 14492206 (+)
G32539 NA other upstream 2561478 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3342313 9369898 ~ 9628662 (+)
G32286 NA other upstream 3431764 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3622156 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4586383 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1461941 14439253 ~ 14486706 (+)
G33283 NA other downstream 2187036 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2577507 15554819 ~ 15626955 (+)
G33406 NA other downstream 3066630 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4472008 17449320 ~ 17452659 (+)

Expression


Co-expression Network