AMCG00019295


Basic Information

Item Value
gene id AMCG00019295
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12767954 ~ 12778615 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019295
ttttgtttcctatCTATAgctggtgttttttcttttttttttttttttttggggggggggtgtaattATGATGAAGCTATCTGAGCAGGGGGGACAGGACTTAAAGCTTTGCCACAGGCAGTACACTTCATTTCACGTCTATTTCGGATAGGCTAGCTTTTGATGTTATTCGTATTGagtatgttttgtgtatttatttaatttattttaccgtCTATTGGACATTTTGTGAGTCTTTTGGCGTTATATGAAAGTGTACTGGGCAAAAAAGCCAGTGAAGAGGCTATAGCAGGAGAGGGTTGGGacagaaatcaaaatgaaagtaAGCCGTACCTTGAGGGGCCAAAGACAAATAATGGTGTTGCCTGGCACTGGCGTCTCCACAAGGGGATTCCCTCTCAATTTCATAAAGTCCACTCTATAGACCGGAACCTGGATGGACCTCAGTGACCCCAGCTGGTCCATGGTCAAGCGGCATTCCTCTAGCAGCCCAGGGTCGTCGCCAGCCGGACAGAGCTACAGTGACAGGAGGGACAGACCTGCTTCTGCCTCTGAAGACCTGAGGTCCCCACCGGGCACCCATCTGGACACTGAAGGAAACCAGCCTTCCCAGAGCAGGTCACTACACTCCTACGTCTCGTTTGGACATCACAGCACCCTGCCCAATTCGGAGGACATCACCCTGTTCACGGATTTGGACCAGTGCAATAAACTCATCATCTCCAAAGGAAGTTTGATCGTTGATCCAAGCGACATGTATCAAACTCTAGCCATTGCGGCGGCCCAGGGCCAGGCAGGGTACGATTCCTCGGCCGGCAGCTACATGCACTCCACGACCAACTCTCCAGTCTATGTGCCCACCACCCGGGTAGGACCTATGATACCCAGTCTCCCGTACCTGCAGGGCAGCGGGTCTTCCCAGCCCAGCCACGGCGTCAGTAACCACCCGGTGTGGTCCCAGCCTGCCCCCGACAGTCCCTCATACAGCACCGGCAGCCCGCACACCTCCAACCGCTTCCATTactcccccagcccccccatGAATAACGGGGCTTCCCGGGACAGCGGCTACAGTAACACCCTTAACGTGAACGGCAGAGACCAGTATGGTACCCTTGGCCGCCCTCTCAATGGATCTTACCCCAGTCCATATTCTCCTTATGTGGGACCACAGCTGTCCACGGCCTGGCCTGGAGGACACTTTGACAACACCATGCTGCATACACTACAATCCAGAGGAGCGCCTATACCTATTCGAGGTCCTGGTGGAGGCAGCAGTAATCCAGTTCCCATGACTCCAACCTCCACGTCTTCTTCTAATTCCGAGGACTGTTCCAAGAACGGATCCCCGTCCGCGCAGGGGCAGCTGTCGGTTTCAGGGgtCAACTCCTCTGTGATGTCAGGCCAGGGGGAAGCATCCAGCTCTGGAGGGTCTGCGGTTAAGTACTCGGGTCAAGAAGGCCTCTATCCCGGAGTCAGCCTGACCTCCACGGCTGAAGTGGCCGCCTCTGTCCGAGGGGAGACGTGGTGTGCGCTGGCACTGGCCTAACTCTGTGGAAAACAAGATTGATGCAGGCCTCAGATATCTCACCAGCGGTCCATCTGCACTATCATCAAAGCAGCTGTTGAAACAAGGTGGAAAGGCATTACATGggaggatgttttttttcttttcatccttGGGCTTTGACTGAAGAAGAGCTGGACaactaagattttttttaatgtaattgttaaaaAGAAGATATCATTTTGGATAGAGGGAGATGTTGAAGCTAAAAGAAAATCGACATTGTCAACATTGTCAACATCGGCTTTAAAAAGGGAAACTTTTGAACAGACTTAGGAGggatttttaatatgtatatttttctgcaaTGGGTACTTTCAGAACAAGCTCGGCATTCTCTATAGCATATGTGGGAATATGTGAGGGACAAAACTATTTCATATAGATGAATAAAAGACAGATGCATTggctaaacatgtatatatggGTGTATGAATGTGCACTCCCTTTTTTAgcttgtttaattaattcaataattgattaatttggatttgtatgtttttttctgaaccTGTACTGTGGTGCAGAACTTGAGTACATTTGCTGGTAACTGGAATAgaagataaaatgtaaagaaattatTCCTGAATCAAAGCTGAAGTATTTATTAACCTTTCaatgttgaaaaaaatgattattgtCTTCAGTAAAGATGTGTCAGTAggacagaattaaatattttttagggGATTTACTCCTtcataatatacaaatacatattgattATGTGTTGTGGAGTAGTTTTCTTTTATGATAAAgctgcacatttgttttcttctgaaagtTCCTATTGTCGGACTGAAATGTTATGGTTTTATACAGGGTAGCAAACAGACATTCACTGACTTCCataagtttatattttttgtaagtgCAATGTTTTTGTCACAACCAACAGTGTTAAATCTAATGTTTCAGATTTAACAGTAAATTCTGcaattaatgtaaaacatctTAACTTAATGGTACttatcttatttaatttttttccagacatCAATAAAGCTTTAAAGATgtccagattttttttaaacaaaacataaccaaaacaacaactaaaactaaatataaaaataaaaaatgaccgCAAAATCTCTTAGAACAAACTTCACTCAGGAAAATTTTACTGACGCATctttttgttacattgtaaaatgcaaaagaaaaagagcaTTGCGGCAATATTTTCTGGACATGACTGAAACTTTACTACCTAAGTGATATGTGTAAATACTCCAAGACATGAAAATGTCTTAAGTTTTCATGATACCATTTGTAAAATAGACTAATGTATAGATTGGTTTaagccacattttattttaatttttttttctaaagattGAATTGCCtttgatgtatttgttgtttgttcagttaaactaattaaaacattaagtaaTTTTTAACAAGAAAGTATATTTTGCTTGCAGTTTCTCCTTCATTTCAGAAAGCATAATTTTTGCCTATTCTTAAGCAAAATATGTGCTGCataaatttttttaaatagtgagACACTAAGTAAGTGGTACTTTTGTATAAAAACATATGTTGGTATAGAAGAAGAATATTGCAAAGGGCCAGGAAATAATACAAGGAATGATAgaagataaaacaaatctatctTCATTAGCAGTGTGATAGTAGTGTGCTTTATTGGGCTCTGTGTAATGATGTAActacaataaaatgtacttcTGGACCCTGTCTGGTGTGGAGATAGCACTATTTAAAGGAACGTATGAGTAGGAAAAGAGGTCATTAACCTTCCAGAAgtcacagcaaaaaaaaaaagtagtataTGGAGCCTTGAAGTGGAAATTATTAGActacttattttctttcacttcaCTAAACttctaaacaaaacattaagcTCAATTGCTATATTTAAGacagaatacaattaattaactgtTTTTATACAGTCATTGTACTTTACTCTGCCTAAGCTACTTTATTGGTGCTCAACTCCAGTGGTCCAGAGCATTAACAGGCCTTTTAAAATCAGCCATACatggaaaaaagttaaattatgtCATTTAGGACATCAACAATGTCATGACATCAACATTGCGGCACCTTGATATCAGAAAGTGATAATTCCAGTCTGGCTGCCATGAGACACATATAACATCACCAGTGATGAAGCTAAGACTCTTTACCAGCCCATAACTGAAAACCAACAatcttttgaattatttatagtAATGCTGTAAGTGCATTATTGCTTTTAGAACCCCCTGAATGTAACATTTGTCAAAGACTCACATCATTATTGccaataagaacaaaaaaaagtgaaatatatatttatttccttctggCTTTGTAAGACAGAAAACTGGTGTTTCCATTATGGTGCAGAactaacacacagacagcaaaTTATGTGCCaaatatatacttaattatAGTAAAAATACCATAATAATGAGTCAAAACTGTAATCTGTCACAGCTTTAAGACACCCCTCTGATTTCTTCACAGATACAGACATGTATGTTATCTAGCTAAATTGTGTGGCATATACTTGATTTGGTGATTGAAATGATAAACTATCCATGTACTGATTATGATGATATAGGTATGCTATCTGTAGTTATAAAATATCCAGTCttgatttgaaacaatgtttttggttgttctttaattgaatacatgttGTTTATTACACTATACTCATGTCCAATGATATGTGAATATATACCTCTAGCGTCCCACAGTAATATCACAGTCATTTTTACTTGTTTGTATGTGCTTATGGGTAAAACGTTTTGgccatgtatattttatttggtaCGGtttgcagcaaaataaaaacaattatatgcaAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019295 True 4404 mRNA 0.39 4 12767954 12778615

Neighbor

gene id symbol gene type direction distance location
AMCG00019293 mib1,LOC106600429,LOC107747519,LOC107691191,LOC107550435,LOC107681781 coding upstream 45744 12708565 ~ 12722210 (+)
AMCG00019289 mib1 coding upstream 96925 12641964 ~ 12671029 (+)
AMCG00019290 NA coding upstream 169437 12572727 ~ 12598517 (+)
AMCG00019280 thoc1,LOC106600433 coding upstream 313582 12446933 ~ 12454372 (+)
AMCG00019283 impa2 coding upstream 327103 12430978 ~ 12440851 (+)
AMCG00019297 rbbp8,LOC107732059 coding downstream 80365 12858980 ~ 12873054 (+)
AMCG00019300 NA coding downstream 103366 12881981 ~ 12882526 (+)
AMCG00019296 cables1 coding downstream 126859 12905474 ~ 12916716 (+)
AMCG00019298 cables1 coding downstream 148167 12926782 ~ 12928334 (+)
AMCG00019294 LOC107599736 coding downstream 192360 12970975 ~ 12977312 (+)
G32893 NA non-coding upstream 154028 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 155421 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 766790 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1130074 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1319703 11377956 ~ 11448251 (+)
G33075 LOC104962440 non-coding downstream 532799 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 855087 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1374187 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 1506950 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1713277 14491892 ~ 14492206 (+)
G32539 NA other upstream 2358457 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3139292 9369898 ~ 9628662 (+)
G32286 NA other upstream 3228743 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3419135 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4383362 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1660638 14439253 ~ 14486706 (+)
G33283 NA other downstream 2385733 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2776204 15554819 ~ 15626955 (+)
G33406 NA other downstream 3265327 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4670705 17449320 ~ 17452659 (+)

Expression


Co-expression Network