AMCG00019297 (rbbp8,LOC107732059)


Basic Information

Item Value
gene id AMCG00019297
gene name rbbp8,LOC107732059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12858980 ~ 12873054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019297
AAAGCCCCTCTTCCCTGAACGCCCGCGACGCCTGGCCATGTGAGACCAGGGGGGAGTCACGCCAGAGCTGAAGATGAACAGCACAGGGGGGGGCTGCGGCAGCCCCAGCTCAGGTCTGCCCTTGGAGCCGTCCTGTGACCTCTTCAAAGACCTCTGGGCCAGACTGAAAGACTGCCATGACAGCGAAGTGCAAGGATTgcaagttaaaataaacaaactgaagaaGGAAAGATGCTTAGATGCTCAAAGACTGGAGGAGTTTTATACCAAAAATCAGCAGCTGAGGGAACTGCAGAAGGCACTTCAGGACAACGTGAAAGTTTTAGAGGATAGGGAGAAACCCCCACAGGCTGCAGAGGCCCCGGAGCAGGAGGAAGGCTTTATCCCGGACTCCCCCATCCAGCAGGTCTCCCACGCCATGGTTAATAAAATGAGACGTAAAAAGGACAGCAAGCTCGTCCGCTATTCTGAAAGACTTCCTCCCAGCAGTGAGAAATCACCACCCACTGATGAAAACCAGTCAGGCGGAGGTTATACCTCTAAAAAGCCGGCCTTAAATTTAACTGCTGTTGTTGCTGAAACACTTGGACTAGGAGTTCCTGAGGAGTCGgAATCACAGAGTGTTTTAGGCTCCTTCGGTAAAGACATTTCTCCGGCAGTGCAGGTGGCTCTTGAAAAGCAAGACAATGTTGGTACAAGACAGCAGTCTACTGATTCAGCAACCCTTAAGGAGAACAACCTGAGATACTTTGGGACACCTCCAGATTGTACCCAGAACAGGGAGTGGCTGATGCAGCAGAGGACTTCTCCAGTGTTTGGTAGTTCTGCAAGACCAGTTCAAAATCCAGACCGCAAGGACGAACACTCCCCACCTGTCTTAGGCAAGCAAGTGAAAATTGCTCCCCTTGTTAATCGACTCAAGTCAAAGACAGAAGACGTCCCCCGCATTGCACCACTCAGAATGGGAACTTCCAATGGGCATTCCTTGGAAAATGGGGAACAGACTAGAGGAAGTGCAAGCAACATGCAAATGCGAGTGAAAGACACCTCAAAGGCTGCGATTGTTCCCACAGAGCTGTGTCAAAACACTCCAGAGCTTCCCACTGTAAAGGTGTCTGGGCTAGACAGTGTGAAGAGGAAGAAAAGTGAGGAAGACCAGCCCTTTGACAGGAAAAATAAAGccgccagcagcagcagcagccaggaGAGCATCTTGGACGACGTAGCAGACAAGCCACTAGACCTGTCAGAGCGCCTGAATGGTGGCCGCTCTCAGGACAGGGAAAGCAAACCCGTTTCCAAGGACAGGCTAAAGCAGGCCACCCTGTTCGACATGCGCAAAGCCTCCCATAATTCCTCCCTTTCCCTCCTGAAGATGTACAACGGCAGCAGCCTGCCAAACATGGACTCGCAAGAGGATCCTTACTTGCAGGAAGCCATAAGGCAGTCTCTCGGTTACAAAACCAGAGATGGGACCCCAGAGAAGAAACCCACCCCAACAGTCTTCAGGGTCCCAGCAACTCCTCCAGGAAGCAAAATGGATCCAGACCAGCTGTTTGACATTAGGACACCAGACGTGCAAGAGCCAATCAGAAAGAAAAGCCGGGGATTGTCTAAAGACTGTGAACAAGCTTCAGTGCTGCAGCCCAACCCCTGTGCTGTTTCAAAGAGGAGCCCCCCACAGAGAGACGATGGTAAACCTGTCACAAGCAATATGACATGGAGCCTGGATCCAGGAGCGGACCTTTCCCAGTACAAGACAGATGCCTTATTAGACCAAGagTCTGAGCCTCACAGGTCTGAGGGCGAGACCATGGACACAGACTGTACCTTCATCAGCAACAGTGTGCTTCTCAAAGGATCGAAGCCAAGCAGGGTTTCAAACACCAGCTATGCTCTGGGCCAGAAAGCAAATGACAGCTTGGCAGAAATCTTTGACCGCACAGCCTATGGGGAATATGAGTCTtgtccactagatggcagtCCACAGGAAGCGGTGGGTCAGGCAGAGGACAGAGAGGAtgaagaggaggcagaggaCTCTGTGGACAtgTCTGAGGAAGTCACAAACATCCCACATCAAGCAGTGTATTACGCAGACCTGCCAGAAGGAGAGCGCCAGAAGAAGCTGTCGGCCTGCTCCCGGCACCGCTTCAGATACATCCCGCCCAGCACCCCCGAGAACTTCTGGGAAGTGGGCTTTCCGTCCACGCAGACCTGTGTAGACAGAGGGTATGTCAAAGAAGATATGAATCCTCTGCAGCGTACAAGAAGGAGGCGACCgtacaatgcaatgttttccCCTAAAGGCAAAGAGCAGAAGACATGATGGCTGTTTTTAGAAACtgagcaaaataaatcacaaaacagGCCAGTGTCTCTCTGATCGCAATAACAAATCTACAGTAAATGTTGCGGGAAGAATTGCAATTAATTGtacatacaaaatgttgcaTAAGACTGTGGACCTTGTATGGGAGCTTTTACTGCATCTCAACCacaaatggtttaaaaagaaaagctattGTATAAGACATTTCTGCTGCTAGAGGTTGTGTCTGGGAGTTATTTCAAGCAGAATTACTTGTCTTGGGCAAGCTTATCTAAAGGTGCTTCCACAATGTTAGATTAGCTGCTTCTCAATAATCTCCCTGCTTACAAAGGCAGGCATTGCAAAGACCGTGTTTACAGAGTCGAGTGTGAATGTGGCTTTTTTGATTACTTCTATTCACTATTGGATGAACGGGCAGATTTACTCAGAGCACAGTAATTCACTTGACTTTTAAGCAGATAAGTATTCCAAAGCCTTGTGCTTCAGTTCCAATCCCATTTGTAGTTCAAAAGGTCTTCACATTCGTACTAGAATTcaacagggttttgttttttgttgttgataatattatttattgtttatttaagtgttaatcaaaataagcaaagaaacaaaaatctcaTCTAATTTTGTTTATCTAATATTTTTGAGgagtgggttttgtttttacagtacaTATGAATAAGTGCTGTTGTGGATCAAATAACATGGAGAGCTATTGTCCTGTACTAGTGCTTCTCACAGCCCTGCTCTGGGGGGTTCAGGGAACTGAGCTGAGTACTGCCCAGACTTTGTCTAAGGGTCTCTGGAGGTGGCAGTTATGATAGGCTGGCACACAAGTTGTTTTTTCTCACTTCTCActgtttgcagtttttttttttttttttagaacacGTTAGCGGTTTCAAATCGGGGCCAAGACGTTTCTGAATGTCACTGATATTCTTCAAGTATAATTCATTTTGCACAGTATTTTTT

Function

symbol description
rbbp8 Predicted to enable DNA binding activity and single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in DNA double-strand break processing involved in repair via single-strand annealing and double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair; cell division; and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be active in site of double-strand break. Human ortholog(s) of this gene implicated in Seckel syndrome 2. Orthologous to human RBBP8 (RB binding protein 8, endonuclease).

NR:

description
PREDICTED: DNA endonuclease RBBP8 isoform X3

GO: NA

KEGG:

id description
K20773 RBBP8, CTIP; DNA endonuclease RBBP8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019297 True 3310 mRNA 0.47 14 12858980 12873054
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00019295 NA coding upstream 80365 12767954 ~ 12778615 (+)
AMCG00019293 mib1,LOC106600429,LOC107747519,LOC107691191,LOC107550435,LOC107681781 coding upstream 136770 12708565 ~ 12722210 (+)
AMCG00019289 mib1 coding upstream 187951 12641964 ~ 12671029 (+)
AMCG00019290 NA coding upstream 260463 12572727 ~ 12598517 (+)
AMCG00019280 thoc1,LOC106600433 coding upstream 404608 12446933 ~ 12454372 (+)
AMCG00019300 NA coding downstream 8927 12881981 ~ 12882526 (+)
AMCG00019296 cables1 coding downstream 32420 12905474 ~ 12916716 (+)
AMCG00019298 cables1 coding downstream 53728 12926782 ~ 12928334 (+)
AMCG00019294 LOC107599736 coding downstream 97921 12970975 ~ 12977312 (+)
AMCG00019299 clg21h18orf8,LOC106916022,LOC103129440,LOC101473408,LOC104932202 coding downstream 105245 12978299 ~ 12985783 (+)
G32893 NA non-coding upstream 245054 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 246447 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 857816 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1221100 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1410729 11377956 ~ 11448251 (+)
G33075 LOC104962440 non-coding downstream 438360 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 760648 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1279748 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 1412511 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1618838 14491892 ~ 14492206 (+)
G32539 NA other upstream 2449483 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3230318 9369898 ~ 9628662 (+)
G32286 NA other upstream 3319769 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3510161 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4474388 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1566199 14439253 ~ 14486706 (+)
G33283 NA other downstream 2291294 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2681765 15554819 ~ 15626955 (+)
G33406 NA other downstream 3170888 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4576266 17449320 ~ 17452659 (+)

Expression

AMCG00019297(rbbp8,LOC107732059) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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AMCG00019297(rbbp8,LOC107732059) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00019297(rbbp8,LOC107732059) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network