AMCG00019302


Basic Information

Item Value
gene id AMCG00019302
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12985747 ~ 13006328 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019302
CACACCAGCTGTACCCGACGGAGCGCAGATCATATAAAATAGTACATCCAGTGAGGAGACGTGTATAAAAGATAGTTTGAGGGAGACGGGGATGGGGTGGAAATCGAGAGGAAGCCACACGGGTTGTCTATTCGTGTGTTTGCTGGCGATAGTGGTATCCTACCATCTGGTCCAGGCCCAGCATTGTGTGTGGTATGGAGAGTGTCAAGATGTGCCAAACAAAGAAGGGAAGAAGTATAACTGTAACTACACAGGACCTCCAGAGCCATTGCCCCAGGAGGGGCATGACCTAGTGATGGAGCTGTGTCCAGGCTTTGATTATGGCAATGTTAGCCTGTGCTGTGATGTGCAGCAACTCCAGACCCTGAAAGGAAATCTCCAGCTCCCTCTCCAGTTTTTGTCCCGTTGTCCGTCGTGTTTTGTCAACCTGATGAATCTATTCTGTGAGCTCACGTGTAGTCCTCGGCAGAGTGAGTTTCTAAACGTCACACAGTTTTCCTCCTATATGGATCCAGcgacaaaagaaaacaaaaccaatgttTTAGAAGTTGAGTTCTACATTGGGCAAACGTTTGCAAATGCTATGTACAATGCCTGTAAGGATGTAGAGGCTCCATCAAGTAATGAGAAAGCACTTGGTTTACTATGCGGAAAGGATGCTAAAGACTGCAATGCCACTAATTGGATCCAGTACATGTTCAATATAAACAATGGCCAAACTCCTTTCTCCATTGTGCCTATATTTACAGATCTCCCTATGAGAGGGATGATTCCCATGAACAATGCTACCAAAGGATGTAACGAGTCCTTGGACGACGGCTCGGGCCCCTGCTCCTGCCAGGACTGCTCCCTGATGTGTGGCCCCAAGCCGCAGCCCCCGCCAGTCCAACCGCCATGGACCATACTTGGCCTGGATGCTATGGCAGTAATAATaaaaagaaGGATTTTGTCAGAATATGGACCTATACTGGACAGCAAAACTATTAACTCGATTAATGGAGGCATTGAGGACCAGGGAATGGCGTCTTGCTGTGAGACGCTGGGAGAGCGCTTTGAGAACCTCCTGCGCGTCGTGTTCTCTCGCTGGGGCACCCTGTGCGTCCGGTATCCGCTGATCGTGATCCTCGCCAGCATGGTCTTCATCGCCGCCTGCTCTTCCGGCCTCATCTATATGAAAGTCATCATGGACCCGGTGGAGCTGTGGTCCTCTCCCAGCAGCCAGGCCCGTGAGGAGAAGGACTATTTCGACTCGCACTTCGGCCCCTTCTTCCGCACCGAGCaggtcatcatcaccaccaCGCTAAATTCGTCCTCCATCTACAGCCCTTACTTTGGTGGCCCTGATGTCCCCTTTGGTGCTCCTCTGGACAAGGACGTGCTTCACCAGGTGCTGGATCTTCAAAATGGTATTGAGGCTATACAGGCCATTTATGAGCACGAGACTGTGATGCTGAAAGATATCTGTTTGGCTCCTCTGGCCCCCTACAACAATAACTGCACGATACTGAGTGTACTGAACTACTTCCAGAACAGCCACAGCGTATTGGACCATCATGTGGGGGATGAGTTTTATACCTATGCAGATTACCACACCCATTTCCTGTACTGTGTCAATGCCCCTGCATCTCTGAATGACACCAGTCTGCTGCACGACCCGTGTCTAGGGACCTTCGGTGGGCCTGTGTTTCCCTGGCTGGTGCTTGGTGGATACGATGCTACCAACTATAACAATGCGACAGCCCTTGTCATAACCTTTCCTGTGAACAACTACCACAATGACACTGAGAAGGTGAACAAAGCATTGGCATGGGAGAAAGCGTTTATAAAATTTGTCCAGGGGTACAACAACACCAACCTGACCATTTCCTTCTCATCTGAGAGGAGCATTGAAGATGAAATAAACCGTGAAAGCAACAGTGATATTGTCACCATTCTCATCAGCTACTTCATCATGTTTGTGTACATCTCTCTGGCCCTGGGGCACATCCAGAGCTTCCGCCGGCTGCTGgtGGATTCTAAAATCTCCTTGGGAATTGCTGGTATCCTGATCGTGCTGAGTTCGGTGACCTGCTCACTGGGAATCTTCAGCTTTGTAGGAATTCCTCTGACCCTGATTGTCATTGAAGTCATCCCATTCTTGGTTCTGGCTGTGGGCGTGGACAATATCTTCATCATCGTCCAGACCTATCAGCGAGATGAGCGGATGCCCCAGGAGGATCTCCCCCAGCAGATCGGCAGGATCCTGGGGGATGTGGCCCCCAGCATGTTCCTGTCCTCCTTCTCTGAAACTGTTGCCTTCTTCCTGGGTGCTTTGTCCGTCATGCCGGCTGTGCGAACCTTTTCCCTGTTTGCCGGGCTGGCCGTGTTCATCGACTTCCTCCTGCAGATCAGCTGCTTTGTCAGCCTGCTGGGATTGGACGTCAAGAGGCAGGAGAGCAACCGTGTTGACATTTTATGCTGTGTGAAGCTAAATGAAAGCAACCAACATAAATCAGATGGATGTCTCTTCCGTTTCTTCAAATCTGTCTATTCCCCTTTCCTAATGAAAGAGTGGGTGAGGCCCATTGTGATTGCGGTGTTTGTTGGAATCCTGTCCTTCAGTATCGCAGTGCTCAACAAAGTGGAGATTGGCTTGGACCAAAAGCTGTCAATGCCTGATGATTCCTACATGCTGAACTACTTTGACAATCTAAGTACTTATCTACACACGGGGCCTCCAGTTTACTTTGTGGTTAAGGAAGGCCATGACTACAAGTCCCTGGAGGGTCAGAACATGGTGTGTGGAGGTGTGGGCTGTAACAACAATTCTCTGGTCCAGCAGATCTACATGGCTTCTCAGATTGATAACTACACCAGAATAGGCTTTACTCCGTCCTCGTGGCTTGATGATTACTTTGACTGGGTGAAGCCTCAGTCAACGTGCTGTAGAGTTTACAACTCGTCTGGGCAGTTCTGCAATGCCTCAGTGGTCGACAAATCCTGTGTGCGCTGCCGTCCTCTTACTACAAAGGGGAAAATGAGGCCAGAAGATGGGGACTTCATGAAGTTTTTGCCAATGTTTCTGTCCGACAACCCCAATCCCAAGTGTGGAAAAGGGGGTCATGCTGCATACAGCTCTGCTGTTGACCTGATTCAGAACAACACCGATGTGGGTGCCACCTATTTCATGACCTACCACACCATTCTGAAGACTTCACCCGATTTCATTGATGCAATGAAGAAGGCTCGCATGTTGGCAGACAACATCACACAGTCTATGGGCCTGGAGGGCAAATCCTACAGTGTCTTTCCTTACAGCGTGTTCTACGTGTTCTATGAGCAGTACCTGACCATCGTGGAAGACACGGCCTTTAACCTGGGCATGTCACTGACTGCCATCTTCGTGGTGACCCTGATCCTGCTGGGCTTCGAGCTGTGGTCGGCGGTGGTGGTGAGCTTGACCATCGCCATGATCCTCGTCAACATGTTCGGGGTGATGTGGCTCTGGAGCATCAGCCTCAACGCCGTGTCTCTCGTCAACCTGGTCATGAGCTGTGGGAtctcggtggaattctgcagtcACATCGTGCGCGCCTTCTCGATCAGCACCAAGGGCAGCCGCGTGCAGCGAGCTGAGGAGGCCCTGGCACACATGGGCAGCTCGGTGTTCAGTGGCATCACATTGACCAAGTTTGGTGGCATCCTCATCCTGGCTCTCTCCAAGTCTCAGATCTTCCAGATCTTCTACTTCAGAATGTACCTGGCCATTGTCCTCCTGGGAGCTACGCATGGACTGATATTCCTTCCAGTGCTGCTCAGTTATATAGGTCCATCGGTAAATAAAGCAAAAGTAAGGGCAACCAATAACCGTTACAGAGGCACCGAACGAGAGCGGATCCTGAACTTCTAGGACTAGTCCATGCAAAGGTGAAGCACAGCAGCGTCGGGGTGTGTCATCTGTTGTAGGCGTTTCTATGATCTTCACACTAGTGCTTAAATGACAGTGTGGATTGACATTTCTCCTACTCAGGAAATATGCAGTAATGAAGGTTGTGTATTATGTGGAGTAATTTTAACACTGTTCAAAGATTTGAGACACTTTTTGAAACCTACACGGGCAACATGCATCATCCAAGATTCTGAATAGCACAGGACAATGTCCAACTTGAAGGTTTTGTTACCAAGTAAATGAAGTGGACTGGGGGGAAATGTACATTACATGCACTAATTTCTTCCAATAtgcaaaaacaatgcaatttattttgctgctctctacattttttttaggGAATACCAAAACTATTGAGAACAAACTGTTGGACACACCAGTGtaacttagtttttttttctaaatgccaaaaacagtgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K12385 NPC1; Niemann-Pick C1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019302 True 4411 mRNA 0.49 25 12985747 13006328

Neighbor

gene id symbol gene type direction distance location
AMCG00019303 NA coding downstream 19837 12939007 ~ 12965910 (-)
AMCG00019292 abhd3 coding downstream 350488 12616147 ~ 12635259 (-)
AMCG00019291 NA coding downstream 371900 12600533 ~ 12613847 (-)
AMCG00019287 rock1,LOC106569322 coding downstream 481197 12466126 ~ 12504550 (-)
AMCG00019286 usp14,LOC106569325 coding downstream 521755 12455079 ~ 12463992 (-)
AMCG00019301 ankrd29,LOC106613857 coding upstream 2434 13008762 ~ 13018024 (-)
AMCG00019311 NA coding upstream 198096 13204424 ~ 13208267 (-)
AMCG00019310 znf521 coding upstream 450711 13457039 ~ 13471322 (-)
AMCG00019313 NA coding upstream 475864 13482192 ~ 13537109 (-)
AMCG00019315 ss18 coding upstream 623677 13630005 ~ 13661038 (-)
G32844 NA non-coding downstream 532120 12452597 ~ 12453627 (-)
G32825 NA non-coding downstream 618521 12366786 ~ 12367226 (-)
G32786 NA non-coding downstream 918695 12062278 ~ 12067052 (-)
G32784 NA non-coding downstream 925496 12059624 ~ 12060251 (-)
G32779 NA non-coding downstream 984582 12000950 ~ 12001165 (-)
G33030 NA non-coding upstream 97625 13103953 ~ 13106250 (-)
G33070 NA non-coding upstream 249035 13255363 ~ 13257313 (-)
G33076 LOC104962440 non-coding upstream 305175 13311503 ~ 13311800 (-)
G33092 NA non-coding upstream 626958 13633286 ~ 13633502 (-)
G33132 NA non-coding upstream 1075387 14081715 ~ 14081918 (-)
AMCG00019284 NA other downstream 562427 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 1100176 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 3551633 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 4083869 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 6301446 6680625 ~ 6684301 (-)
AMCG00019312 NA other upstream 162108 13168436 ~ 13188292 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 655788 13662116 ~ 13665230 (-)
G33163 NA other upstream 1485563 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 1945514 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 2686154 15692482 ~ 15721452 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_01601113_01624224 NA coding CI01000003 null 1600965 ~ 1624224 (-)