AMCG00019306


Basic Information

Item Value
gene id AMCG00019306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13292718 ~ 13310822 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019306
GGCAATTCGAGTTGCACTGGGATTTCCATTGAAACACCTGATTTAAAGTGGTAAATGCTGCTTTCTAGCAATTACATTGAATGAAGCTGTGGGAATCGGCGCGCTACATTGCACTTGCGctgtttattaattgattaattgtgcAGACTATGGGAGGGGATATCCCCGGACTGAACTCCAGCTCGGGTTCCAGCACACTGCGCGACTCCGCCAGGATCAGCGGCGCTGCGGCTGCTTTCTCCGGCTCTATGATGGTGATGCTGGCGGTGCTGATGGTCACTCTTGTGGTCGTCACGGTGCTGGGGAACGCACTGGTCATTCTGGCTTTCGTTGTGGACAAGAGCCTCAGGAATCAAAGCAATTATTTCTTCCTGAACCTGGCGATCTCAGATTTCCTAGTGGGTGCCTTTTGCATCCCAGTCTACATTCCTTATGTTCTGACAGGAAGATGGATGTTTGGGAGAGGTCTCTGTAAACTCTGGCTGGTTATAGATTACCTCCTGTGTACTGCTTCAGCCTTCAATATTGTACTGATAAGTTATGATCGCTTCCTCTCTGTAACTAGAGCTgtTACATACAGAGCCCAGCAAAGCATGACCAAGCATGCCATTGGCAAGATGATCGCAGTGTGGGTGTTAGCATTCCTCTTGTACGGCCCAGCCATCATCTTCTGGGAGTCTGTGGTTGGAAAAAGCAACGTTCCCAACGAAGAGTGTTTTGCAGAGTTTTATTACACCTGGTACTTCTTGCTTTGTGCTTCAACTTTCGAGTTCTTCTGTCCGTTCATCTCTGTGGCCTACTTCAATTTGAGTATCTACGTAAACATACAGAAACGCAACAAAAGCAGAATCAACTTAATGAAGGAAAGAAATGGACAAATGGCAGCCCAGCGAGATGAAGACCAGCTGAGTTCTGTGTTCTTtgtgaaaacatgcaaaacGTCCTCAAGTGGCAAAGCGACTGGAACGGAGGCCATAGCAGACGCAGACATTTCACCATCTTCCAGCTGCCCAAGCAATGCTTCCTTTGTGTTAAAAAAGAAGGCGATGTCAAGCAACTTGAGGTGTATTAATGTCAATCCTTTGTCATCAGAGGCAAGACGGGAAAGTCTGTCTAACAAAATCACACAACATTCTCGGTTGTCCCGAGACAAGAAAATTGCCAAGTCTCTAGCTatcattgtttgcatttttggCATCTGCTGGGCTCCGTATACTCTTCTGATGATCATCCGGGCAGCCTGCGGTGGCAGCTGTGTCGAGCACCACTGGTACGAAATCACGTTTTGGCTGCTGTGGTTAAATTCGGCTATAAACCCATTTTTATATCCTCTCTGCCACAGCAGTTTCAGGCGAGCCTTTGCCAAGATATTGTGCCCAAAGAGAATGTCTATACAGCCTCAGATGGAAGCCCATTCTTGTCAGTGATGCTAAGCCATGCATAATATCACACCACTTTGATGGGGgaattgcttttgaaaaattGTGATATTCCAGGTgcaaaaaaaagctaattttggAAATCACCGGTTGGACCAAAAGTATTATATGTTTGAGATCAACACaggaatgaaatgaaatgtgtacAATGTTTAAGCTTGTTAATTCGTTTTCACATCCATATTTCCTACAGTGTAGCCTACATGTTGATACATATTACAGTGTAGaatttaagtgattttatgTTTGATGTAACATTGTTctctaaaaataatattattgaaacaaaaaaagtattatttcagttttctttaaaaaaa

Function

GO: NA

KEGG:

id description
K04151 HRH3; histamine receptor H3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019306 True 1759 mRNA 0.44 3 13292718 13310822

Neighbor

gene id symbol gene type direction distance location
AMCG00019309 NA coding upstream 55892 13214956 ~ 13236826 (+)
AMCG00019308 NA coding upstream 130656 13153820 ~ 13162062 (+)
AMCG00019307 LOC106584358,LOC106613856 coding upstream 143534 13141611 ~ 13149184 (+)
AMCG00019304 NA coding upstream 180005 13031652 ~ 13112713 (+)
AMCG00019305 NA coding upstream 261952 13007109 ~ 13030766 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding downstream 351400 13662222 ~ 13666577 (+)
AMCG00019316 NA coding downstream 359431 13670253 ~ 13674752 (+)
AMCG00019322 NA coding downstream 1362151 14672973 ~ 14698199 (+)
AMCG00019321 NA coding downstream 1403983 14714805 ~ 14720892 (+)
AMCG00019325 NA coding downstream 1586003 14896825 ~ 14901846 (+)
G32893 NA non-coding upstream 678792 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 680185 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 1291554 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1654838 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1844467 11377956 ~ 11448251 (+)
G33075 LOC104962440 non-coding downstream 592 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 322880 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 841980 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 974743 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1181070 14491892 ~ 14492206 (+)
G32539 NA other upstream 2883221 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3664056 9369898 ~ 9628662 (+)
G32286 NA other upstream 3753507 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3943899 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4908126 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1128431 14439253 ~ 14486706 (+)
G33283 NA other downstream 1853526 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2243997 15554819 ~ 15626955 (+)
G33406 NA other downstream 2733120 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4138498 17449320 ~ 17452659 (+)

Expression


Co-expression Network