AMCG00019307 (LOC106584358,LOC106613856)


Basic Information

Item Value
gene id AMCG00019307
gene name LOC106584358,LOC106613856
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13141611 ~ 13149184 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019307
AATGCCATGATGACGTTTGAGGAGGAAAAGATGCAGATGGCCTGTGAGGACCTGAAGACGACAGAGAAGCTGTGTGAGAGTGATGACGCCGGGGTCATCGAGACCATCAAAAACAAGATCAAGAAGAATGTTGACCAGAAGTCGGCTCCCTCGGTGGTGGATCGCCTTCAGAGACAGATTATAGTAGCAGACTGTCAGGTCTATCTGGCTGTGCTGGCCTTTGTTAAACAGGAGCTATCAGCTTACATTAAAGGGGGCTGGATCCTTCGAAAGGCCTGGAAAATCTACAATAAATGCTACAGTGACATCAGTGTGCTCCAGGAGTCGTGTCAGAAGAAGGCCTCTCAGGAATCGCTGCCGTCTGATCGGGCCAATGACAACACCGTGCCCAGGGAGGGGGTGTCGGCGGAGTCTCTGAGTCGGCTGAAGGGCTCAGTGAGCTTTGGATATGGGCTCTTCCACCTGTGTATTTCTATGGTTCCTCCTCACTTGCTAAAGATCATCAACCTGTTGGGCTTCCCCGGGGACCGGCTGCAGGGTCTGTCTTCTCTCACATATGCGAGTGAAAGTAAGGACATGAAGGCCCCTCTTGCTACGTTAGCGTTACTTTGGTACCACACGGTGGTTCGGCCCTTTTTCGCTCTCGATGGGACTGATACACAGGCGGGGCTGATGGAAGCGAAGGCTATCCTTCAGAAGAAGGAAGCGGTGTATCCAAACTCCTCACTGTTCATGTTTTTCAAAGGCAGGGTTCAGAGGTTAGAGTGCCAGATTAATAGTGCCTTGACTTCATTCCACGATGCATTGGAGCTTGCAACAGATCAAAGAGAAATTcagcatgtgtgtctgtatgaaaTTGgGTGGTGCAGCATGATTGAGATGAACTTTAAAGACGCATACAAGTCCTTCGAGCGGCTGAAGAATGAGTCACGGTGGTCTCAGTGCTATTATGCTTATCTGACTGGAgtgtGCCAGGGAGCAACAGGTGATCTTGAAGGTGCAAAGACTGTCTTCAAAGATGTTCAGAAGCTCTTCAAAAGGAAGAACAATCAGATTGAGCAGTTCTCTTTGAAGAAGGCTGAGAGGCTGAGGAAAATGTCTCCCACTAAGGAGCTGTGTATTCTGGCTGCCATAGAAGTGCTCTACCTGTGGAAAGCTCTGCCCAACTGTTCATCTTCCAAACTGCAGAATATGAGCCAAGCTTTGCAGGAAGTGAATGACTCATCATACATGGGTTTAAAAAACCTTCTCCTGGGTGCCATTCATAAGTGTTTAGGCAACATAAAAGATGCCATTCAGTTGGCTGCAAGGGATGAACTGGGCCGTCAGAACAACTCCTATGTTCAGCCGTACTCGTGCTACGAACTGGGCTGCATTCTTCTAGATAATCCTGAGactaCTGGTAAAGGCAGAACATTGCTCCTGCAGGCCAAGGAGGAATTTGCTGGCtatgattttgaaaacagacTGCATGTCCGGATTCATGCCGCACTAGCATCACTGAAAGAAGTTGTTCCACAATGA

Function

NR:

description
PREDICTED: tetratricopeptide repeat protein 39C isoform X1

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019307 True 1524 mRNA 0.49 12 13141611 13149184

Neighbor

gene id symbol gene type direction distance location
AMCG00019304 NA coding upstream 28898 13031652 ~ 13112713 (+)
AMCG00019305 NA coding upstream 110845 13007109 ~ 13030766 (+)
AMCG00019299 clg21h18orf8,LOC106916022,LOC103129440,LOC101473408,LOC104932202 coding upstream 155828 12978299 ~ 12985783 (+)
AMCG00019294 LOC107599736 coding upstream 164299 12970975 ~ 12977312 (+)
AMCG00019298 cables1 coding upstream 213277 12926782 ~ 12928334 (+)
AMCG00019308 NA coding downstream 4636 13153820 ~ 13162062 (+)
AMCG00019309 NA coding downstream 65772 13214956 ~ 13236826 (+)
AMCG00019306 NA coding downstream 143534 13292718 ~ 13310822 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding downstream 513038 13662222 ~ 13666577 (+)
AMCG00019316 NA coding downstream 521069 13670253 ~ 13674752 (+)
G32893 NA non-coding upstream 527685 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 529078 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 1140447 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1503731 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1693360 11377956 ~ 11448251 (+)
G33075 LOC104962440 non-coding downstream 162230 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 484518 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1003618 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 1136381 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1342708 14491892 ~ 14492206 (+)
G32539 NA other upstream 2732114 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3512949 9369898 ~ 9628662 (+)
G32286 NA other upstream 3602400 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3792792 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4757019 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1290069 14439253 ~ 14486706 (+)
G33283 NA other downstream 2015164 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2405635 15554819 ~ 15626955 (+)
G33406 NA other downstream 2894758 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4300136 17449320 ~ 17452659 (+)

Expression


Co-expression Network