AMCG00019311


Basic Information

Item Value
gene id AMCG00019311
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13204424 ~ 13208267 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019311
ATGGAAGAGGAATCTGAGGAGCATTTTCTTCGCGATGCCCGAAACGGGAATCTCAAAGGAATTCAAAAGGTGTTGCAGTCTTGGAACGAAGGTCAAGCATACATTAACATAAATTGCAAAGGCAAGACCAAATCTAATTTAGGTTGGACGCCTCTCCATCTTGGCTGTTATTTTGGACACAGGCATGTTGTGGAGGAACTCCTAAAGGCTGGTGCTACTGTAAACGTACTAAACAACATGGGAGATACTCCTCTGCATCGTGCAGCTTTCACTGGAAGAAAGGAACTTGTTATGTTGCTGTTACAGTATAATGCTTGCGCCACAGTGCTCAATGGAACAGCACAAACTCCAAAAGATGTTACTCAAGATGAAGAAATAAGAACCATGTTAGAAGCTGCAGAGAGGACTGAAGAGCGAAAGCTTGAAGAACGGCTTTTAGAAGCTGCACGGGAAGGTGATGCGAACAGAATAGCTGAACTGCTCAACAGAACAAGGCCCCCGGATATCAACTGCTCAGATGTGCTGGGTAACACACCATTGCACTGTGCTGCATACAGAGGTCAAAAACAGTGTGCACTTAGGCTCCTGAAGAGTGGAGCCAACCCCAACATCAAGAACAAAAATGAGTTCACGCTTTTTGGGATGGCGGTCCTGCTGGGTGGTTCTTCAGGATGGTCAGATGCAGATTCTAATAAACGCCGAGAGGGATGCAAACCCTTAACTCAAGCTGTTTGTACG

Function

GO: NA

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019311 True 738 mRNA 0.46 8 13204424 13208267

Neighbor

gene id symbol gene type direction distance location
AMCG00019301 ankrd29,LOC106613857 coding downstream 186400 13008762 ~ 13018024 (-)
AMCG00019302 NA coding downstream 198096 12985747 ~ 13006328 (-)
AMCG00019303 NA coding downstream 238514 12939007 ~ 12965910 (-)
AMCG00019292 abhd3 coding downstream 569165 12616147 ~ 12635259 (-)
AMCG00019291 NA coding downstream 590577 12600533 ~ 12613847 (-)
AMCG00019310 znf521 coding upstream 248772 13457039 ~ 13471322 (-)
AMCG00019313 NA coding upstream 273925 13482192 ~ 13537109 (-)
AMCG00019315 ss18 coding upstream 421738 13630005 ~ 13661038 (-)
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding upstream 525698 13733965 ~ 13739371 (-)
AMCG00019317 LOC107735723 coding upstream 541587 13749854 ~ 13758818 (-)
G33030 NA non-coding downstream 98174 13103953 ~ 13106250 (-)
G32844 NA non-coding downstream 750797 12452597 ~ 12453627 (-)
G32825 NA non-coding downstream 837198 12366786 ~ 12367226 (-)
G32786 NA non-coding downstream 1137372 12062278 ~ 12067052 (-)
G32784 NA non-coding downstream 1144173 12059624 ~ 12060251 (-)
G33070 NA non-coding upstream 47096 13255363 ~ 13257313 (-)
G33076 LOC104962440 non-coding upstream 103236 13311503 ~ 13311800 (-)
G33092 NA non-coding upstream 425019 13633286 ~ 13633502 (-)
G33132 NA non-coding upstream 873448 14081715 ~ 14081918 (-)
G33204 NA non-coding upstream 1484438 14692705 ~ 14698412 (-)
AMCG00019312 NA other downstream 16132 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 781104 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 1318853 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 3770310 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 4302546 8847151 ~ 8901878 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 453849 13662116 ~ 13665230 (-)
G33163 NA other upstream 1283624 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 1743575 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 2484215 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 5176600 18384867 ~ 18441981 (-)

Expression


Co-expression Network