AMCG00019312


Basic Information

Item Value
gene id AMCG00019312
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13168436 ~ 13188292 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019312
ATGAGACGTCCCCGGAAAAACAACAGTGCTCATATTGCCCCCTCTGATATCCTATCCTCCGGTCAGACCTATCCAGGGCTGGACTACTCTTTTAGACGGGGGTCTCCGCTGCGCAGTGCACTCAGTGAGGATGAGTTCTACGATGCTGTCTCTGGTGAGACGCTCTCCTGTCACTCCAACTTAGAATCGGGCTCGGAGCGTTCTCTGAGTGGATTTGAAAGTGTAGCAAGCTATTCCTTTGAAGAAGAAACCATCCAGTTCAGAAGCAACTGCAGCAGTCCCATCAAAATGTCTCAGGGAAATAGCCATGGCAATGAGGAGCCCCAGTCTAACGGAATCAAGAAACACAGatCAAGTTTACCTGCACCCATGTTTTCGAGGAATGACTTCAGTATCTGGAGTATCCTGAGGAAGTGCATTGGAATGGAACTCTCCAAAATCACTATGCCCATTATCTTCAATGAGCCTCTAAGCTTTCTGCAGCGCCTCACAGAGTACATGGAGCATACGTACCTCATCCACAAAGCAAACTCCTCCTCCGACTCGATTGAGAGGATGAAGAGTGTTGCGGCATTTGCCGTTTCTGCTGTTGCCTCACAGTGGGAAAGGACAGGAAAGCCTTTCAATCCACTCCTGGGTGAAACCTATGAGCTAGTGAGAGAGGACCTTGGTTTTAGACTAATATCAGAACAAGTGAGTCATCACCCACCCATCAGTGCATTCCATGCTGAAGGAATAGAGAATGACTTTGTTTTCCACGGATCCATTTATCCCAAGCTTAAGTTCTGGGGAAAAAGTGTGGAAGCAGAACCGAAAGGAATCATAACACTGGAACTTCCCAAaCACAATGAGGCTTACACATGGACAAATCCAACCTGCTGTGTTCACAACATCATAGTGGGACAACTGTGGATCGAGCAGTATGGCAACGTCGAAATAATCAACCATAAAACTGGAGAAAAGTGTTGCCTGAATTTCAAAGCATGTGGCCTTTTTGGCAAAGAGTTGCACAAAGTTGAAGGCTATATCCTAGATAAAAGCAAAAAGAAGTTGTGTGCACTGTATGGCAAGTGGACTGAGTGTTTGTACACGGTAGACCCAGCAACATTTGATGCGCACAAGAAGACTGACAAGAAGAACACGGAGGATAAGAAAAGCAGTAAACCAACATCCAGTGCTGAGGAACCTGATGAAATGCCATTACCAGATGCTGAAACTGTCCAAGTGATTCCTGGCAGTGAGCTCCTGTGGAGGATAGCACCCAGACCAGCAAACTCTGCACAGatgtaCAACTTCACCACCTTTGCCATGCAACTGAATGAATTAGATAAAGAAATGGAAGGTGTTATCCCTAAAACAGACTGCAGATTGAGACCAGATATACGGgcaatggaaaatggaaatatagATTTCGCAAGTGAAGAGAAAAAGAGATTAGAGGAAAAACAGAGAGCTGCCCGTAAGAACCGTTCAAAATCAGATGAGGAGTGGAAGTCCAGGTGGTTTTGCCAGGGCCCCAATCCGCACAATGGCTCCCAAGACTGGATATATGACAGTGGATATTGGGATAGAAGCTATTCTCAGCTGCCTGATATTTATTGA
>TU41434
AGAAACCCTGCTCTTGGCCCCAGGTGGTTTTGCCAGGGCCCCAATCCGCACAATGGCTCCCAAGACTGGATATATGACAGTGGATATTGGGATAGAAGCTATTCTCAGCTGCCTGATATTTATTGATAGAAATGTCTATGGCCAGTGTAAGTGGGCgttgaaaaatatttgaacttGAACTCCACTTTAACACTCAAGAAAACTCCCTTCATTCTTTACTCTGCCGAGTTGTTTTTATAGGACCTTCACATTGTCAGTTTctgtaaatgaaagaaaaaaacaagatggcTGGCCTTAACAAACACAAGTCTAGCATTTTGTCCACAGtccttattttaacattttcaggaggattttaaaaatgtgaaaaacacataGGCTGTTAACTAGAACTACTGTGCAGCAGATAACGCTAAATAAAAGGTCAAGCTTATAATTTTTCCCAATACTTGTAGCACAACAAAGGTatgaatacatatatgtttatcCCTGTCTGAAGGCACAATTTCTTCACAGAGAAAATAAGCctattttttctattatataaatgttttgtataattaattttCTCCCCATTGTATTAATACAGCATAGGCTCAGGCAATCTTAACTGGGTAAAaccattcagttttatttttaaaatgcagtgttttgagTTGAATGTGATGTGTCATGTTGTGTTTCTCCCAAAACCAAGGTCTTACTTCAGGAATGAAGAAGCCATGTATATGATCTTTGCAGAACAATTTAGAAATTGTACAGCTGTTTTGTGTAAAgactttatttgtaatgtacatcAACTGAGTCTTCTGTATGCTTAAGCTGGTCAGTTGTATTTCAGGAGTATTGCTGTATTTAAATCAGTGATGCTAATGATGAGATTGTTTAGGTGGTGTGAGTCTCTTAAGTCTTAGGAATGTGCAATTAATAACCTGAAAAGCATGAGTTTTGCTTTGTAGgctgaatacattttactgcCTCTTCAACCTAAAAGGGGTTCTTTTTCAGGAAACCCATTTATTCTGAAATTGCCCAGTGTCTCCCTTAACCTTTAGGTTTCAAAGTATAGCCACCTGTTAATTCAGATTAAAACGTTTCAGAAGGCAGTGTGTGCTTTTGAAAACGATCCATGGTGGTCCATTTGCGTggagagattaaaataaacaaacacactttaaatgtctgtaaaatatttaacataatgtttataaaagtgttttaactttatttacgTTAACAGCAAATATTCACATTTGCATACTTGAAAAGAGGAAGTATGAGTACATTTTCTTATACCAGCAAATGTGCGCACAATGGCGGGTAAATGGTTGTTATCGAGACTAAGAAACCTGTGAATGAGCCCTGTGTCTACAATATCTATATAATGTTACAGTAATACACTTATGACATTCCTGTACTTTGTTGTGCGTAGGTACAGTAACGTATGAGGAGATTTATACATGGAAGGTGGCCCGTCTAATGTGCTCTTTACAGATTAGGTTTTAACTACTGTCTTCTACTTTATTAAATTACGTGTTCATTCATTATTCCAACTGCTGcta

Function

GO: NA

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019312 True 1602 mRNA 0.46 14 13169872 13188292
TU41434 False 1562 lncRNA 0.36 2 13168436 13171846

Neighbor

gene id symbol gene type direction distance location
AMCG00019301 ankrd29,LOC106613857 coding downstream 150412 13008762 ~ 13018024 (-)
AMCG00019302 NA coding downstream 162108 12985747 ~ 13006328 (-)
AMCG00019303 NA coding downstream 202526 12939007 ~ 12965910 (-)
AMCG00019292 abhd3 coding downstream 533177 12616147 ~ 12635259 (-)
AMCG00019291 NA coding downstream 554589 12600533 ~ 12613847 (-)
AMCG00019311 NA coding upstream 16132 13204424 ~ 13208267 (-)
AMCG00019310 znf521 coding upstream 268747 13457039 ~ 13471322 (-)
AMCG00019313 NA coding upstream 293900 13482192 ~ 13537109 (-)
AMCG00019315 ss18 coding upstream 441713 13630005 ~ 13661038 (-)
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding upstream 545673 13733965 ~ 13739371 (-)
G33030 NA non-coding downstream 62186 13103953 ~ 13106250 (-)
G32844 NA non-coding downstream 714809 12452597 ~ 12453627 (-)
G32825 NA non-coding downstream 801210 12366786 ~ 12367226 (-)
G32786 NA non-coding downstream 1101384 12062278 ~ 12067052 (-)
G32784 NA non-coding downstream 1108185 12059624 ~ 12060251 (-)
G33070 NA non-coding upstream 67071 13255363 ~ 13257313 (-)
G33076 LOC104962440 non-coding upstream 123211 13311503 ~ 13311800 (-)
G33092 NA non-coding upstream 444994 13633286 ~ 13633502 (-)
G33132 NA non-coding upstream 893423 14081715 ~ 14081918 (-)
G33204 NA non-coding upstream 1504413 14692705 ~ 14698412 (-)
AMCG00019284 NA other downstream 745116 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 1282865 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 3734322 9251152 ~ 9434114 (-)
AMCG00019209 LOC106600477 other downstream 4266558 8847151 ~ 8901878 (-)
AMCG00019165 NA other downstream 6484135 6680625 ~ 6684301 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other upstream 473824 13662116 ~ 13665230 (-)
G33163 NA other upstream 1303599 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 1763550 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 2504190 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 5196575 18384867 ~ 18441981 (-)

Expression


Co-expression Network