AMCG00019316


Basic Information

Item Value
gene id AMCG00019316
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13670253 ~ 13674752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019316
ATGGCACCTAAGGTCGTACTTGGTGCAAGTCAGCTTGCAACAAATTCCTCTGCCATTATAAAGACTAAAGTTTTTCAGTCGAGCACTGCAGTGACCAGCATGAACAGCCAGCCTGTGTTCACGGTTAACACGCCAGGACAGGCCGGTGTGGGCATCAGTTTGGCCCCTGCATCTCAGCCTGGACTGGTTGCAACAACTTCTGTGGCCCCCGCCTCGAAAGTGACCAGAGTAGCCACCATAACTCAGACACCAGGGAAGGGGGCAGTGATTTCTGTGCCAAGAGTAACTACACCTCAGCAAAATGGAGCACAGTTGACTCCCCAGAAGACAACTGTACAATTGCCTGCAAATTTTCAGATTCCTCAAGGAATGGTACTCATCAGGAGTGACAGTGGACAGCTTATGCTAGTATCTCAACAGGCATTAGCCCAGGCGCAGGCACAGGGCCTGGCACTTCCCCGAATGCCAACTGCGACCAGCACCAATACAGTTAGAGTCACTGCAACTCAGGAGACATTGGAGAATGTAAAGAAGTGTAAGAATTTCCTCGTGACATTGATCAAGCTGGCCTCCAGTGGAACCCATTCTGCTGAAATGGCAAAAAATGTCAAGGAGTTAGTGAAAAATCTGCTGgATGGAAAAATTGAACCAGAGGAGTTTACTGACCGATTGTACACTGAATTGAAGTCCTCACCCCAACCTTACCTGGTGCCTTTTCTCAAGAGGAGTTTGCCAGCCGTGCGCCAGCTGACACCAAACTCGCAgctcttcatccagcagtgtgTGGTGCCGAAGCCACAGGCAGCTGGCAGTGTCTCCACAGCAGCAGTCACCTCACAACAGGCTGTTAAACCGACTCCTGCCAATAGCAAAACCATACAACCTAATTCAGTCATCACACAGCCTGTGAAACCTGCACAGTCTCCCAGGCCAACCCAGCTGGTAAGCAAGTCCTGA

Function

GO: NA

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019316 True 957 mRNA 0.51 5 13670253 13674752

Neighbor

gene id symbol gene type direction distance location
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding upstream 3676 13662222 ~ 13666577 (+)
AMCG00019306 NA coding upstream 359431 13292718 ~ 13310822 (+)
AMCG00019309 NA coding upstream 433427 13214956 ~ 13236826 (+)
AMCG00019308 NA coding upstream 508191 13153820 ~ 13162062 (+)
AMCG00019307 LOC106584358,LOC106613856 coding upstream 521069 13141611 ~ 13149184 (+)
AMCG00019322 NA coding downstream 998221 14672973 ~ 14698199 (+)
AMCG00019321 NA coding downstream 1040053 14714805 ~ 14720892 (+)
AMCG00019325 NA coding downstream 1222073 14896825 ~ 14901846 (+)
AMCG00019331 NA coding downstream 1228590 14903342 ~ 14907478 (+)
AMCG00019324 NA coding downstream 1239273 14914025 ~ 14927971 (+)
G33093 NA non-coding upstream 32082 13633702 ~ 13638171 (+)
G33075 LOC104962440 non-coding upstream 358511 13311414 ~ 13311742 (+)
G32893 NA non-coding upstream 1056327 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 1057720 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 1669089 12000963 ~ 12001164 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 478050 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 610813 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 817140 14491892 ~ 14492206 (+)
G33307 NA non-coding downstream 1809326 15484078 ~ 15533196 (+)
G33392 NA non-coding downstream 2253817 15928569 ~ 15931201 (+)
G32539 NA other upstream 3260756 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 4041591 9369898 ~ 9628662 (+)
G32286 NA other upstream 4131042 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 4321434 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 5285661 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 764501 14439253 ~ 14486706 (+)
G33283 NA other downstream 1489596 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 1880067 15554819 ~ 15626955 (+)
G33406 NA other downstream 2369190 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 3774568 17449320 ~ 17452659 (+)

Expression


Co-expression Network