AMCG00019317 (LOC107735723)


Basic Information

Item Value
gene id AMCG00019317
gene name LOC107735723
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13749854 ~ 13758818 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019317
ATGGCGAGAATGCCTGGCAGCAGAGATTGCTATACCGACACAGAGGGGACTGCAAATGAACAGATGAGTTACCTGGAGAGAAgcgacgaggaggaggaggaggatgagatTCAAGAAATACAGATAACGGGGGATGAGGAGGATGAGTATGAGGAGGATATCGGGCTGGAGTGGGAGGCAGAGAGCGAAGACCCCGACAGCGGTTCTGTGGTGGGGACGGAAGCGGTCCTTATGCGGAGTACGGACCGGGCGAGCGAGTTGGACTCGGAGGCGGATCCGTTTCACCTCTCCGGGCTGGACTCGGACCTGGAAGCGGACCTGCAGCGCTCGGATCGGTCCAGGCTCAGCGAGAACACGCGTCTGGCCACCAGGTATGCGGTGAGGATCTTCCGGGAATACCTGAGCGAGAAATCCCAAAGTCCCGACTTCGAGACCATGGACAAGGAGGCGCTGTGCCAGGTGCTCCGCTCTTTCTATGCAGAGGCGCGCTCGAAAAGTGGGCAGCTGTACAGCAAGTCGTCTCTGATCAGTATCAGGAGCTCCCTGAACAGGTACCTCAATGAGCCGCCCTACTGCCGCACTTTAGATCTCACTAAAGACCCGGAGCTCAGGAGTGCCAACCTGACCCTGGCAGCGGTGATCAGGAAGCTGGAGGAGCAGGGTGCGGGTCCTGTCGTGCAGAAACAAGCCATCACCCGGTCCGACCTGAGGAAACTGTACACTTCTAGTGTGTTCAATACCAACACGCCTTTCGGCTTGCTCAACAAAGTGTGGTTTGAGACCTGCATGTATTTCTGCACCAGAGGCAGGGAGAACCagagggagctggaggaggactCTTTTGGCTTGGCGATTGATGAAGATGGCAGAAAGTTTATCTACTTCAAAGCGCTGGGGCCGTACCACAAATCCAGGTCGGCGTCCTGGAGTAAAAAAAGGACTGACACCGACGAGGACAACTTGCCCCGCATGTACGAGACGGGCACGGAGTTCTGCCCCTATGCCAGCTTTGTGAAATACATCTCCAAACGCAATCCGCTGTGCAAGGCGTTTTTTCAGAGACCGAGGGATCACTGCAGCGAGAGTGACATGACCTGGTACGAGAACAAAGCGATAGGCAAGAACCTGCTGGGCACCAGGATGCAGATGCTGTCCAGGGCGGCCAAGCTGTCCAAGACTTACACCAACCACTGCATCGGTGCCGTGTCCATTGCCACTCTGAACAGCATAGCTGGCATCGGGTCAAAGTTAGCGCCTCACCACCACATCGCTTCGGAAACGGTCAATGGCAGCCCGCATCATTTCCAGCTGGTGGTCCCTTTCATGCACCAGGTCGAAGATGGCATAGAGATTAAACCTCAGGCAACGAGTAAGCGGCCGCGGCCGGGCTACCCTGCTGAAGGCACGGGGCGGGCATCCCCTAAGAGGCTGTGTGTGCGGCCGGCGGAGCACGCTGACCCCCCCATCGTGATCGCGGTGAGGACTGACCCCCAGCCTGCTGCCCCCCCCGAGTCCAACGGGCAGCCTGCCACCCCTTCGCCGGCAATTGTACTGCCTGCGCAGGATAACCGACCCAATATGTCCAGGCCCGTGATAACCAGGTCACCTGCGTCACCACTGAGCAACCAGGGCATCCCAACACCTGCACAACTCACCAAGTCCAATGCACCGGTACACATCGATGTGGGCGGCCACATGTACACCAGCAGCTTGGCAACGCTGACAAAGTACCCAGAGTCGAGGTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107735723, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019317 True 1746 mRNA 0.58 2 13749854 13758818

Neighbor

gene id symbol gene type direction distance location
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding downstream 10483 13733965 ~ 13739371 (-)
AMCG00019315 ss18 coding downstream 88816 13630005 ~ 13661038 (-)
AMCG00019313 NA coding downstream 212745 13482192 ~ 13537109 (-)
AMCG00019310 znf521 coding downstream 278532 13457039 ~ 13471322 (-)
AMCG00019311 NA coding downstream 541587 13204424 ~ 13208267 (-)
AMCG00019319 NA coding upstream 58539 13817357 ~ 13824628 (-)
AMCG00019320 cdh2 coding upstream 393899 14152717 ~ 14179714 (-)
AMCG00019327 NA coding upstream 858101 14616919 ~ 14638232 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding upstream 962041 14720859 ~ 14731647 (-)
AMCG00019330 NA coding upstream 1017990 14776808 ~ 14782550 (-)
G33092 NA non-coding downstream 116352 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 438054 13311503 ~ 13311800 (-)
G33070 NA non-coding downstream 492541 13255363 ~ 13257313 (-)
G33030 NA non-coding downstream 643604 13103953 ~ 13106250 (-)
G32844 NA non-coding downstream 1296227 12452597 ~ 12453627 (-)
G33132 NA non-coding upstream 322897 14081715 ~ 14081918 (-)
G33204 NA non-coding upstream 933887 14692705 ~ 14698412 (-)
G33206 NA non-coding upstream 955973 14714791 ~ 14718233 (-)
G33268 NA non-coding upstream 1302956 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 1402894 15161712 ~ 15161967 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 84624 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 561562 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 1326534 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 1864283 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 4315740 9251152 ~ 9434114 (-)
G33163 NA other upstream 733073 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 1193024 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 1933664 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 4626049 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 5535994 19294812 ~ 19301547 (-)

Expression


Co-expression Network