AMCG00019318 (kctd1,LOC103479566,LOC108239680)


Basic Information

Item Value
gene id AMCG00019318
gene name kctd1,LOC103479566,LOC108239680
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13733965 ~ 13739371 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019318
AGAATTGGCCGGCTCTTCGATGGCACAGAGCCCATCGTGCTGGACAGTCTCAAACAGCACTACTTTGTTGACAGAGACGGACACATgttcagatacattttaaatttcctCAGGACCTCCAAGCTTTTGATTCCTGATGACTTTAAGGATTACAGCCTGCTCTACGAGGAGGCGCGCTATTTCCAGCTGCAGCCCATGCTGGGGGAGCTGGAGCGCTGGAAGCAGGACCGGGAACTGAGTCGGTTCTCGCGACCCTGCGAGTGCCTGGTGGTGCGAGTGGCCCCGGACCTGGGCGAGAGGATCACGCTAAGCGGGGACAAGGCCCTCATCGAGGAGGTCTTCCCCGAGATCGGAGACGTCATGTGCAACTCGGTCAACGCCGGCTGGAACCACGACTCCACGCACGTTATACGCTTCCCCCTTAACGGCTACTGCCATCTCAACTCCGTTCAGGTTCTGGAGCGGCTGCAGCAGAGAGGCTTTGAGATCGTGGGCTCTTGTGGTGGAGGGGTCGACTCCTCACAGTTTAGTGAATATGTCCTTCGGAGGGAAATCAAGAGGGCACAGCGTGGACCTTCAGTCATCCGGATAAAACAGGAGCCGCTGGACTAAGGACAAAATCACAGAATTGCTCAGGTTCAAAGAGCACAAGACATTTTCGAAGCAGCCAGTactgaacactttttttttttgttttttttgttttttttaaattgcagactTTGAATCCGGAgaaccaacaacaaaataaatcacacaggCATTTCTAATCTAAAGACATTTGAGGAATAACTCATTATATTTTCAGTCTTCTGGAGTTTTGTGATTAAAAGGCTCAGCATTTCCAGCTCTCATATTATACCTATtccagtgtttaaaaaaagaaaaaaaaaaaagaaaaagtttgttttaaaactttgaGACTACATCAATGAATTTCCCATTCCAGACTGACCAGGTTCATTGCAGAAAACAAGCATTTAACTACTGAAATCAGTCAGTATGGTTACGGTACTAATGCATCTTCTGTTTCTGACTATAACTTTGATGTGCAGTGAATTACACAGCCAACaggattaaacattttatatggaAAACTCTAGAAAACCAAGAAAGGTCTtggtgcttttaatttaatttggacccttttttaatttatttttttatttcaaagctaGCTCAATAAGACTTGTTTTTCAGTATTAGACgtttaaataattcaacatCTAACTGGTTTTGTCCAGATGTCAATTTTTTTCATgattacaaaaatgaatgttttgtttttccaagtaaaatattgaaaaggTGTGTGGACCTATTTCATAAATCCATAGCAAATAATTTTATGAAAGTCCTTGTCATTATTACTGTAAGgaagtttccttttttaaataatacgttTAGTGCTTTCATAACTGATGAATATTCAGAAATGCATATTCATAAACACATGCAAGACCATGTCTGCCTGGGATATCTAACCCAGCCTAAATTAAATAGACCTGAAAATTGGGAACATGAATTAATtctcacaaaaatatataaacaaaagtgTGACCTGTGTATatgtaagttttttttgtttttgtttgtttttatattgcaattgtgtgttattttgaaCTGAAATTACTGTCACTGTTACATCAACCAATCGGACAACTTATCTGACTGTTAACAAGACTCAACATACTAAGAAAACCTTCGAAGATGAACATGATTCACAACAAGTACAATAGCATTGATGAATAAAAAAGAGGGCAATTAACAGGCCAATTGAGTGCTGGTTATTAGGTATGATTTTAATTTACCTTGTTTGAAGAAGTTTACCATCTACTTTAAAGTAAACATAACCCCAGGCTACTGTCTGAACTAATGTCTGAAGTCATTAGATTtatcaaaatcataaaatatagcTGTCTATCAGCTGTCCCACACTTAAGtcttatttaattgtgtatccTTGAAGAAAGTAAATAAGAATGTAATACAAAACACtagataaatatttaacaaaagtgTAGACAATCTGTAAATCAAATTTTGTTTGCAGTATCTGAGCTTTGTATAAAGTAATTTGAATTCAGGTTGTCTCTAGTATGCTTAACATACTCAAACATGTGACTTTCTGCAGATGTTCAAGTCAGAGAAAGTTGGCCCAGTTTCAATAAACAAAGTGTCATGGACACCATTTTAGAACAGA

Function

symbol description
kctd1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within protein homooligomerization. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in scalp-ear-nipple syndrome. Orthologous to human KCTD1 (potassium channel tetramerization domain containing 1).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD1 isoform X1

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019318 True 2206 mRNA 0.38 3 13733965 13739371

Neighbor

gene id symbol gene type direction distance location
AMCG00019315 ss18 coding downstream 72927 13630005 ~ 13661038 (-)
AMCG00019313 NA coding downstream 196856 13482192 ~ 13537109 (-)
AMCG00019310 znf521 coding downstream 262643 13457039 ~ 13471322 (-)
AMCG00019311 NA coding downstream 525698 13204424 ~ 13208267 (-)
AMCG00019301 ankrd29,LOC106613857 coding downstream 715941 13008762 ~ 13018024 (-)
AMCG00019317 LOC107735723 coding upstream 10483 13749854 ~ 13758818 (-)
AMCG00019319 NA coding upstream 77986 13817357 ~ 13824628 (-)
AMCG00019320 cdh2 coding upstream 413346 14152717 ~ 14179714 (-)
AMCG00019327 NA coding upstream 877548 14616919 ~ 14638232 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding upstream 981488 14720859 ~ 14731647 (-)
G33092 NA non-coding downstream 100463 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 422165 13311503 ~ 13311800 (-)
G33070 NA non-coding downstream 476652 13255363 ~ 13257313 (-)
G33030 NA non-coding downstream 627715 13103953 ~ 13106250 (-)
G32844 NA non-coding downstream 1280338 12452597 ~ 12453627 (-)
G33132 NA non-coding upstream 342344 14081715 ~ 14081918 (-)
G33204 NA non-coding upstream 953334 14692705 ~ 14698412 (-)
G33206 NA non-coding upstream 975420 14714791 ~ 14718233 (-)
G33268 NA non-coding upstream 1322403 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 1422341 15161712 ~ 15161967 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 68735 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 545673 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 1310645 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 1848394 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 4299851 9251152 ~ 9434114 (-)
G33163 NA other upstream 752520 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 1212471 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 1953111 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 4645496 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 5555441 19294812 ~ 19301547 (-)

Expression


Co-expression Network