AMCG00019319


Basic Information

Item Value
gene id AMCG00019319
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13817357 ~ 13824628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019319
gattatttaaaactttataaatatctattatgttaatttacatatacatttaaaacagtgcCATTTAAGATTTCATCATACAAAACCCATCCAGCccatcatttcattttctcctgTATTCTACTTTAGGAGGTGCCTGCCATCGTGTAATTGTGAGAGCATCATGGTGGCGTTTAAAGGCATCTGGACCCAGTCATTTTGGAGAGCTGTTTCTGGGGAGTTCTTGGCAACCTTGATTTTTGTCCTCCTCAGTCTTGGCTCTACAATCAACTGGAGTGAAAAGGCAAACCCACAGCCATCAGACCTTGTCCTCATCTCCCTGTGCTTTGGGCTCAGCATTGCCACCATGGTGCAGTGCTTTGGACACATCAGCGGTGCCCACATTAACCCTGCTGTGTCTGCGGCCTTGGTCTGCACTAGGAAGCTCAGCTTGGCAAAGGGTATATTTTATGTGCTTGCCCAGTGCCTGGGGGCTATAGCTGGGGCAGGAATCCTGTACCTTGTGACACCTGCTGATGTGAAGGGTGGCTTGGGAGTCACCACGGTCAACTCTAAGATCTCTGTTGGTCATGCACTCGTGGTCGAGTTGTTTATCACCTTTGAACTGGTTTTCACTGTTTTTGCCACTTGTGATGCCAAACGAAAGGATCTCAAGGGCTCTGCTGCTTTGGCCATAGGTTTTGCTGTCACCATCGGACATCTGTTTGCTGTGTACTGGGTAGGTCCAGTCATGGGTGGCATCATTGCAGCAGCTCTATATGAATATCTGTACTGCCCAGACCCTGATATGAAGAAGCGTTTCAAAGAGGTCTTCTCTAAGGGCTCCTACCCCTCTAGGAAGTATCAGGAGGTGGAGGAGTGCCGGAGCCAGGGAGAAACTGAAGATGTGATGATCAGGCCAGGGACTGTCCATGTTATCGATCTGGAAAAGGAtgagaagaaagacaaagaccCTGCAAGTGAGGTGTTGTCTTCAGTATGACTAGCAAGGAGCACTGGGAAAGGAGACAGACCTGCTGATCTCTATCGATACTCTGTTTCAACACTCAAAGAGACAGACCTTCTGTAGACAAACAAACTCTTGTTTCCAGCTGATGAATAGGCAGACATTTTGAGCTCCAACCCATTGTATTCTTGTCCATAGCAGTCAGCCAATGCTGCAACTCATTTGGCATTTAACGGTGAATGGATTATTTATACAATGGAGTCAACTGTGGACCCTTAAATTAGTATGATCAATGTTTGATTATTTCACAATCCAAAAGCAGACTGTCTAGGTCACACATATACAAAGTATATTATGTcagatataaatatttttttttctgtaacgATGAAATATTCAGGTACTTGCTTTTTTATTACTTACTGTTGCACATATGAGATCTATAGCATTAACATTAACAGTTAAAGACAAGCCAGGTAAAGATCTTATACTGTGAGATTCAGAGCTTGTAGTCTGGTTGTGCTATAGTCAGAAAGTCATGGTTTTCTCcttttaagttaaatgttttaacttaatATACAGATATATGAAGTATGCTGAATTGCtgcctgattaaaaaaaactaaacatctaCCACCACTTATGTTGCAGTgctcatataaaatacatatacagctctggagaccactccaagttcagaaatcaatgttaagtggtctcttaatcttttccagagctatatattcatatttgattttatttgtaatgtgtgCTGGAGCAGAACTGTAAAGGATTTATATGTTCTTGTTTGgtaattgcattaaaaatgtagttcTTGAAACAGgcatatttgcatattcataaGACATTTGAAATTGTGCTCCAGAAAAATAGAATCTTGAAAAAGCTTAAGAAGACAAACTCTTGAGGGTCACAAGATGTAATTGACTGTACTTAATATCTTGTTATTGGCTGTCCTTAAGACATTTAACAGTACATTAACATAGGTCAATTAGCATCTgcatattctgttttttgtttttgtttttttcctttataagTACTCTGCTACTTTTAATTGACTTTGTGTTTGTACATTTATACACTGCCAGGATTGTGTTTTGTACCgtaatgttacatttcattatttatttgttccctTTTAgtgcatgtatttgtgtttttaaccttGACCGCAAAACCCTTGCCTTTGGGATTAATGCCTTTTGGGATTCATTTGCTAGTGTTTCAACTCAAACTTCAGGTTGTGCTCAGGACTGAAATAGTCTAAATGATACTAATAAAACTATACtctaattcaattatattaaaagtagtttgacataatgtgactcagttcAGTACAATAGCTTTGTGTAGGTCCATTTCCAGTTTTGTAGACCAATGTCAGAATATTTTCACCAGCCAAGCCTTACTTTCAGGGAAacagttaatatttaaaaatataatcctattaaatacttatttattttagattctttatatttttatgtcagCTTTAACATGGATTTATAAtacaattagtatctgtaattgtttttgagATCCTTGCatgaaaattgtattatgtattattttttgtattattgttgttgttgttgttgttgttgttttcatgtcattgttgttttgttgttgttgtatcaGCActgcttgttttcagtaaattgcACTATGAATGGAGGGAATTGTGACTTGGGAAGATATCAATGCAGTTATCATTCCCCAAGATTATGGGTAATATTGTTCATTTAGGCCTAATACAAAtgagtaatatttaattttgttcaagAAGTGAGTGTCTTAGATGAACGTCTTGTTTGACCATGAAAATGTCatcatgttttattaactaCTGCATAACAACTTTTTGTTATGATTTACAAGACaattttcactttattacttGTGCAGAAAATTATAAAGTTTTACTCACCTTAGGGGGTTTTGACATGATGACTTGATATGACTTGTATTTCCTGGTAAAGGAAGGGTTTATAGGGAAAACAGAGAGCAAATGAACGACTGAAACCCAGCATGTTTCATTCCATGGCCAATTATGCTGAGATATTTAACTTGGTTGCATTAATCTGAAGTTACTTAATTGAGCAAGTAACTTACAATAAAATTGAAACAGAAAGATTTTTTGTAGCAGAAGCAAACAGAAATGTCACTGTAACCAAATCTTCTAAAAACCTAAAACTGTATTTACCTAACAATTGTGAAATTGCTCTGTTTGAAATGATCAGAAATGAATTCCCTGAAAGTCAGCTATACTAGGCTTTCCTATGTTCTATCAGctcaaatgcattatttgttttctgtaatgtatCATTTAGAGTCGTACAAAATACTTGAGGataatgttgttgttgccatACAATTATCACTGTcttctaaaatatttttatcAGAATGTCGGTTTTTTTGGCATTgcagtttgtcttttttcttttttaatacacataaCTTGGCTAACTGGAATAGGAATGCTGTCCATGATATAAATGTGTCTTTCAGTGCCCAACATCAGttgattaaatttaaatttaaattcagaTGCTCCAACAATTCCACAAGTCATAAAGCAATACCACTTTATTTCTGCCAGGTTGGGAAgatgtttttgatgttgttcATAATGATCCTGCACAGAAATAAGATATATTAAAGTCAAACTAGGTTGCCAATATTTACACCTTTTTTGCTGGTTGAAAAGACAAATAATCTTAGGCCTGAAACCAATATAGGTGACCATGACACACTATTAAAAGTTTCAGTACTATTTGCATTAAATATTgacaacaaatatatagaaTGTGTCTCAAATgacttattaaatattaattctaACAAGTTTTAAGAAGTTCAGCATTTGGTTTGTATAGCTGTTGTATTGATATAAccttacttattttaaaattcaatttaataattcaaCTTCAGTTCACTTTTTTATTGCATTCAATACCTTTCAATACATCATTGTGTTAGGGGTGCTTATAGAAATTACCTTGTGCTTATTCAGTAAGCCTCACAGAGAGGTGCAGTGTTTTTCAGTAAATTTATTGgcttttaaatgttcaaatttGTGTATTTCGGAAACCATTTCTGATAAAGTTTTATAATTCAGTAGGTAGCCTGAAAAGCATTGTTCTTTTCCAATAATTTAATATGCATGTCAAACCGTGGTgttgtttgttatgtttcttctattattattattttagtaagaAATATAGGTGAGCCTCAGCACCATCTTAGTCTTgacattatgttttgtttttattgttttatgtacatttttgtcagtgaattaaaatcaat

Function

GO: NA

KEGG:

id description
K09866 AQP4; aquaporin-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019319 True 4294 mRNA 0.35 3 13817357 13824628

Neighbor

gene id symbol gene type direction distance location
AMCG00019317 LOC107735723 coding downstream 58539 13749854 ~ 13758818 (-)
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding downstream 77986 13733965 ~ 13739371 (-)
AMCG00019315 ss18 coding downstream 156319 13630005 ~ 13661038 (-)
AMCG00019313 NA coding downstream 280248 13482192 ~ 13537109 (-)
AMCG00019310 znf521 coding downstream 346035 13457039 ~ 13471322 (-)
AMCG00019320 cdh2 coding upstream 328089 14152717 ~ 14179714 (-)
AMCG00019327 NA coding upstream 792291 14616919 ~ 14638232 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding upstream 896231 14720859 ~ 14731647 (-)
AMCG00019330 NA coding upstream 952180 14776808 ~ 14782550 (-)
AMCG00019328 NA coding upstream 1012602 14837230 ~ 14895216 (-)
G33092 NA non-coding downstream 183855 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 505557 13311503 ~ 13311800 (-)
G33070 NA non-coding downstream 560044 13255363 ~ 13257313 (-)
G33030 NA non-coding downstream 711107 13103953 ~ 13106250 (-)
G32844 NA non-coding downstream 1363730 12452597 ~ 12453627 (-)
G33132 NA non-coding upstream 257087 14081715 ~ 14081918 (-)
G33204 NA non-coding upstream 868077 14692705 ~ 14698412 (-)
G33206 NA non-coding upstream 890163 14714791 ~ 14718233 (-)
G33268 NA non-coding upstream 1237146 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 1337084 15161712 ~ 15161967 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 152127 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 629065 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 1394037 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 1931786 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 4383243 9251152 ~ 9434114 (-)
G33163 NA other upstream 667263 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 1127214 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 1867854 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 4560239 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 5470184 19294812 ~ 19301547 (-)

Expression


Co-expression Network