AMCG00019320 (cdh2)


Basic Information

Item Value
gene id AMCG00019320
gene name cdh2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14152717 ~ 14179714 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019320
ATGatatttattttcacagtttcctATGCTAACATtgtcatttccatttttgtctcCTCTTTCCCAGTGAGATTTGTTGACTGCGGCAAAAATGGACAACTTCAGTATGAAATCAGTGACCCAGCAGACTTCCGGATAGGTGGTGATGGAGTGGTTTATGCTGCGAGAAGTTTCCATGTTTCTCACAAGCAGACATTTGTGGTAAAAGCACAGGATTCGGAGACCCAAGAGCAATGGCAGACAGAAGTGAAATTGACCCACAGGCCATCACCCAGCCAAACGTTGCAGCATGGGACGAAATCAGGTGCTCCAGAGGTGTCCCAGCAGGTCCAGGAAATTGTATTTCCAAAGCAACACCCAGACAGCAGTGGGCTGCTGAAGCGCCTGAAGAGAGATTGGGTTATCCCCCCAATCAATGTTCCAGAAAACTCAAGGGGCCCTTTCCCACAGGAGCTTGTCAGAaTTAGGTCAGACCGTGATAAAAATCGCTCCCTGCGTTACAGCGTCACAGGACCTGGTGCCGACCAGCCTCCTACCGGGATCTTCATCATTAATCCAATTTCAGGACAGCTGTCTGTGACTAAGCCTTTGGATCGGGAACAAATATCTAACTTTCATctAAGGGCACATGCAGTGGATCTGAATGGAAACCAGGTGGAGAATCCAATCGACATTGTAATCAATGTGATTGACATGAATGACAACAGACCTGAATTTCTGCACCAGATCTGGAATGGCACTGTTCCTGAAGGGTCAAAGCCAGgaACTTTTGTAATGACTGTCACTGCTATTGACAAGGATGATCCCAAATCTGACAATGGAATTTTGCGTTACAAGATATTGTCTCAAAATCCTGAAAGCCCTTCTTCGAACATGTTCACCATTAACAATCAGACTGGAGACATCATCACAGTAGCTGCAGGACTTGACAGAGAGaaagtACCGCAATACACTTTAATAATTCAGGCAACTGATATGGAGGGAAACCCGACATATGGGCTCTCTAACACAGCAACTGCTGTTATCAAAGTGACAGATGTCAATGACAACCCTCCTGAGTTCACTGCTGACACCttctATGGAGAGGTGCCAGAAAATCGTGTAAATGTTATTGTTGCCAACTTAACTGTGACGGATAAAGACCAGCCAAATACACCTGCCTGGAACGCAGTGTACAGAATCACTGGAGGAGATGCCACGGGCAGATTCTCTATCCCCACAGACCCCAACACTAATGAGGGCTTGGTTACTGTTGTCAAGCCTATTGACTACGAGATCAGTAGGACGTTTGTGCTAACTGTGGTTGCAGAAAATCAAGTGCCTCTGGCCAGGGGCATCCATCTTCCTCGTCAGTCAACTGCAACAGTCTCCATTAAAGTTATTGATGTGAATGAGAGTCCTTATTTTGAGCCAAACCCCAAGCTTATCAAACTGGAAGAAGGCTTACCAGCAGAATCAATGTTAACAACCTTTACTGCCCAGGACCCTGATCGTTTCATGCAGCAGACAATAAGatactCAAAGCTTTCAGATCCTGCAAACTGGCTGAAAATTGACCCTTCCAGTGGCCGTATTTCTACAATTGCAGTTCTCGATAGAGAGTCTCCTTATGTGAAGAATAATTTGTATAATGCTACATTCCTTGCATCAGACAATGGTGTCCCTCCAGCCAGTGGAACTGGCACACTGCAGATTTTTCTGCTGGATATCAATGACAATGCTCCACAAGTGTTTCCTCAAGAGGCAGAGATCTGTGAAAAACCAGAACCCAATGCCATCAATATCACAGCTGTTGATGGCGACATCAACCCCAATGCTGGCCCCTTTGCCTTTGAACTTGCACTCAAGCCTCCAGATGTGAGGAAGAACTGGACCATTACTCGTCTGAATGGTGATTATGCCCAGTTGAGTCTTAAGATCAGTTTCCTTGAAAGTGGCATCTATGAGGTCCCCATCCTAATCACGGACTCGGGTAACCTTCCCATGTCCAACACCACCTATCTCCGAGTGAAGGTGTGTCAGTGCGACCACAATGGTGACTGTGCCGATGTGGAGCGCATCATTGCGGCCGGCTTGGGGACAGGAGCTATCATTGCCATTCTGCTTTGCATCATTATCTTGCTCATCCTCGTCCTGTTGTTCGTGGTGTGGATGAAGCGTCGTGACAAGGAACGGCAAGCCAAGCAGCTGCTGATTGATCCCGAGGATGACGTGCGTGACAACATACTGAAATACGACGAGGAGGGGGGCGGAGAGGAGGATCAGGATTATGATCTGAGCCAGCTTCAGCAGCCTGATACAGTAGAGCCGGATGCCATCAAGCCTGTTGGTATTAGACGTCTTGATGAGAGACCAATTCATCCCGAGCCCCAGTATCCAGTAAGATCAGCTGCTCCTCACCCAGGGGATATTGGTGACTTCATTAATGAgGGACTTAAGGCTGCAGACAACGACCCAACAGCTCCACCCTATGACTCCCTGTTGGTGTTTGACTATGAAGGCAGTGGATCCACAGCAGGCTCTTTGAGCTCCCTCAACTCTTCCAGTAGTGGAGGCGACCAGGACTATGATTACCTCAACGACTGGGGACCAAGGTTTAAGAAACTTGCAGACATGTATGGTGGAAACGACGACTAATTAAAAATTGAGTGGCACCTTTTTTATGGGACAAGGACAGCTTCTAAAACCGATATTCCCGAAGAgagatcaaacaaaacaaacaaaaaaacacaaaaaaacacaaaaaaagctaGGCTTTAACTTTGTAGTCTACTAGCACATATGCTTGTTGAAGGCTTTGGCATAGGCTGCAATCAAATTCGAGCTCAGAGGGAACATTGGTAAACTGACACTGTTTGGATCGTTGATATTAAAAGAGCGCTCAGTTACACTTGAATTTCACAGTACAGAAGCACTGGGATTTTATGTgcctttttgtacatttttggaTCTGAATACTTAGTTTTATGTTCAAGGCTTTAATGGTACTGACTTTTGGAGTGATTTCAAAACTAAGGAAGTATGTTAAAATGGTATGCTTGTACATGCTTTTTGGTTACACCATACTGCtgtttgtttaatacaaatatttaagcgaatggggaaaaaaatatgaaaaagtcaTGGAAGGATCTTTGTTAGCTTGGAGGGGGAGAAACACCTGAAAACAGCAATGTACAGTGCGCTAGACTTTTAGATAGATTTTTTCACTAAAAATTTTAAACTTATGCAGCTGGTTGCAAATAAAGGGAGTCATAAATCATCATTTTGTAGCGgaatcagtttttgtttttctgaagtgGTATAGTATTTTtcgaaaatgtttattttgttctaatcCATGTACACTTTATTTGCCTTAGTCAACCTCTGGTACTTTGATTTTTACTTCACTGTAAAGAAAATGCGTGTACATAATGTTTTTTGGCGTAGTCTATGAAGAAGTGCAAAAAGTTCAGAacttgtatatgtataatttggACTACAGATTCAagttttttgcatgtttttatcttttcattataaaaaggTATTTCCAaaatttatttacaaaacaaaatgacatttaCACAAATGGGTGACATAATGGAAAGTAAGAAATAGCCTTTTGTAAAAATAGGAATCTAATCAGCACAACTGTTTGAATTCGTACCAAAAAAGGGGGTGTTATGACACCAGTGGCACTAATAACTGAAACAGCTTTAAGACTGGAAAGGTTTTTGACGGCGGCTTTGCGGATAATATGTACcagaatacaaattatacatcTCTGACCCCAACAATCCGAATAAAATGCTAATTTTGGAGCTAGTGACTGTTTCTGAATTGTTTTTTCCACTTCACTGTGTCTGGATCTCTGTAAAAAGAAAGTCCAATGTTCTTAACTCATTTGGTTTGATAGAATGACATTGTTTGATAGTCTAATTAAATTTTCTCTgtacagttttgtgtgtgtgtgcatgtgtgtgtatgtctgtgtctgtcacacacacaaggcAAATTTACTGTATACTGCTTCC

Function

symbol description
cdh2 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within several processes, including animal organ development; embryonic morphogenesis; and nervous system development. Located in perinuclear region of cytoplasm and presynaptic membrane. Part of catenin complex. Is expressed in several structures, including germ ring; immature eye; mesoderm; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in agenesis of corpus callosum, cardiac, ocular, and genital syndrome; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 14. Orthologous to human CDH2 (cadherin 2).

NR:

description
PREDICTED: cadherin-2

GO: NA

KEGG:

id description
K06736 CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019320 True 4019 mRNA 0.43 15 14152717 14179714

Neighbor

gene id symbol gene type direction distance location
AMCG00019319 NA coding downstream 328089 13817357 ~ 13824628 (-)
AMCG00019317 LOC107735723 coding downstream 393899 13749854 ~ 13758818 (-)
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding downstream 413346 13733965 ~ 13739371 (-)
AMCG00019315 ss18 coding downstream 491679 13630005 ~ 13661038 (-)
AMCG00019313 NA coding downstream 615608 13482192 ~ 13537109 (-)
AMCG00019327 NA coding upstream 437205 14616919 ~ 14638232 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding upstream 541145 14720859 ~ 14731647 (-)
AMCG00019330 NA coding upstream 597094 14776808 ~ 14782550 (-)
AMCG00019328 NA coding upstream 657516 14837230 ~ 14895216 (-)
AMCG00019329 LOC107559729,LOC107553429,LOC104958571 coding upstream 746987 14926701 ~ 14937229 (-)
G33132 NA non-coding downstream 70799 14081715 ~ 14081918 (-)
G33092 NA non-coding downstream 519215 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 840917 13311503 ~ 13311800 (-)
G33070 NA non-coding downstream 895404 13255363 ~ 13257313 (-)
G33030 NA non-coding downstream 1046467 13103953 ~ 13106250 (-)
G33204 NA non-coding upstream 512991 14692705 ~ 14698412 (-)
G33206 NA non-coding upstream 535077 14714791 ~ 14718233 (-)
G33268 NA non-coding upstream 882060 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 981998 15161712 ~ 15161967 (-)
G33285 NA non-coding upstream 1003066 15182780 ~ 15184537 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 487487 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 964425 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 1729397 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 2267146 11852108 ~ 11885571 (-)
AMCG00019213 NA other downstream 4718603 9251152 ~ 9434114 (-)
G33163 NA other upstream 312177 14491891 ~ 14558290 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 772128 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 1512768 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 4205153 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 5115098 19294812 ~ 19301547 (-)

Expression


Co-expression Network