AMCG00019321


Basic Information

Item Value
gene id AMCG00019321
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14714805 ~ 14720892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019321
AATCTGCAAGGCAATACTCTCATACTTCAGTAAGCATCGGATACTAAAATAAGAATGGGCCGTGCCATGATCTTTATCTTTTTTGCTGCCGCCATCTTTCTCTGTGATGCTGCACCAGTGGACCAGGCCGAACATGGGGTTACTGACAATAAGTGCCCCCTGATGGTGAAGATTCTTGATGCTGTACGAGGAATGCCAGCAGCCGCCATCAAACTGAAAGTCCTGAAACTGACAGAAGAGAAGACATGGAAGGAGGCAGCCACTGGGGTTACTGACCAGACAGGGGAAGTTCATGGTTTAATCGCAGAAGCTGACTTTTCTGCAGGAGTTTACAAGGTGGAGTTTGATACAAAATCTTACTGGAAGGCCGAGGGTAGAACCCCTTTCCACGAGGTGGCAGAGGTGGTGTTTGAAGCCAATACTGATGGCCACCGTCACTACACCCTGGCTCTTCTGCTGAGCCCTTTCTCATACACAACTACTGCTGTGGTCACCGAGGCACACCCATAGAAATGTTCAGAGCACACACAAATTAGAATCATGCAATTGGATCACAAAGTCTTCGACATAggaagatatatatatatatatatatatacacacacacatatatacacatatacacacacacacacacacacacacacacacacaaactgatagatttgatcattttaaatgaaaataaagaataatctaGCCTGCtgatacattacaataaaatctTCAAGTACAATCAATGCTTTGCTatcatttatgcatttattttcataaaagactgtaatgataaaaatatacatattctaTCAACATAAATTAGAAGATGAATAGTCTACAGGGAAATTCATTTGCAGCAATGCTACTCCACTGTTTCAAAGCAACACATcagaattataatttaaaaattgctAACCTTTAAAAGAAATAGAGCAATGTAACAAACTGGCCTAAAACAGCAGATATCCATCTTTATTGTTCATACAGATATGTCAGTTGTATGCATGATTGTGCATGACATTAAGGTGACAAATGTAACAAGAACTTCCAAAGTTGcaccaaataaacattttaaatgtctttataacAGAACTGTGTTTATaccaagtgtttttttgttgtttgttttttaatacctGCAGGCAATTCAATTGTATTTCCATTGCCCTGGTATGTGAAAAACTGACAAACTCAACCTTCAGGggaaaattttaattaaaataaaaagcaaaaaacaaaacaagtgttgGGGGTCAAAAAAAAAGcctgattatattatattatatgcatCAATGAGTATCATTCTTTAATCCACAACAACATGGATGTGCTACATTGGCTGcttatattgaaaaaaatcaacatcaaaagtatattatagtataataGTATACAGGTTTTAAGAGagttctgcaaaaaaaaaaaaaaaacactaagtGGGAGTGCAGGGGAGGAATAATCATGAAACATGAGACTGGGGTAACTATGACCGTCAGTGGTACTGTAAACTCTTTCAATTGTCATTACAGATCATAAATGTAGTAAACAAATAAGAGTGAAAAAACAGACACCAATGATTGTACAATGCACTGCAAAGCTTCCAAATGGTCAAAAAGTTCAGTCATAGCTGAATGAAACAGCACAGGGTTTTACTGCAAATGCCTTTCCCAGGAaccaaaaaacagcattttccaCAGCTTACATCTGAAATGCTTAAAATGTCTTGGTCAGggctcaatttaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K20731 TTR; transthyretin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019321 True 1761 mRNA 0.36 5 14714805 14720892

Neighbor

gene id symbol gene type direction distance location
AMCG00019322 NA coding upstream 16606 14672973 ~ 14698199 (+)
AMCG00019316 NA coding upstream 1040053 13670253 ~ 13674752 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding upstream 1048228 13662222 ~ 13666577 (+)
AMCG00019306 NA coding upstream 1403983 13292718 ~ 13310822 (+)
AMCG00019309 NA coding upstream 1477979 13214956 ~ 13236826 (+)
AMCG00019325 NA coding downstream 175933 14896825 ~ 14901846 (+)
AMCG00019331 NA coding downstream 182450 14903342 ~ 14907478 (+)
AMCG00019324 NA coding downstream 193133 14914025 ~ 14927971 (+)
AMCG00019323 NA coding downstream 218048 14938940 ~ 14945227 (+)
AMCG00019337 NA coding downstream 498329 15219221 ~ 15228776 (+)
G33161 NA non-coding upstream 222599 14491892 ~ 14492206 (+)
G33153 NA non-coding upstream 428789 14285565 ~ 14286016 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding upstream 554102 14152802 ~ 14160703 (+)
G33093 NA non-coding upstream 1076634 13633702 ~ 13638171 (+)
G33075 LOC104962440 non-coding upstream 1403063 13311414 ~ 13311742 (+)
G33307 NA non-coding downstream 763186 15484078 ~ 15533196 (+)
G33392 NA non-coding downstream 1207677 15928569 ~ 15931201 (+)
G33404 NA non-coding downstream 1281904 16002796 ~ 16003201 (+)
G33408 NA non-coding downstream 1380066 16100958 ~ 16101159 (+)
G33422 NA non-coding downstream 1645222 16366114 ~ 16366342 (+)
G33159 LOC103376870 other upstream 228099 14439253 ~ 14486706 (+)
G32539 NA other upstream 4305308 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 5086143 9369898 ~ 9628662 (+)
G32286 NA other upstream 5175594 9261374 ~ 9539211 (+)
G33283 NA other downstream 443456 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 833927 15554819 ~ 15626955 (+)
G33406 NA other downstream 1323050 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 2728428 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 4284132 19005024 ~ 19021412 (+)

Expression


Co-expression Network