AMCG00019322


Basic Information

Item Value
gene id AMCG00019322
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14672973 ~ 14698199 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019322
ATTCAGTCAGACAATGATACTCAAGGACACATAGAGTACTCAATCCGTGGGCAAGGTGCTACTGAAGAACCCAAGAACCTCTTTACTATTGATCCGAAAAATGGCTACATTCGAATCAACAACATCCTGGATAGAGAGAAACAATCACATTATACAATATATGGAATGGCAAAAAACATGCACAACCTGTCTGTAGAGTTGCaagaaattacaattaattttacTGTTGAAGATCAAAATGATTGTCCtcctgtgtttaaaatgaatcaagCTGGATCTGTTCATGAACTAAGCATAAAagAAACTGAGGTAATGCAGATAATTGCTACTGATGATGATGAACCCAATACTCAGAATTCAAAAATTGCATTCAGCATTTTGGAACAGTCCCCAGCAGGGCAGATGATGTTCAGGCTTGACAGCAATACAGGCAAGATTTATGTTAAAGAATCAAACCTTGACAGAGAAaTACAAGGTTCCTATTCTTTAATTGTTCAAGGTACTGATCTTGGTGGATCAGCCGGAGGAATGACTGGAACAGGAACTGTACAAATCATAATTGAAGATGTCAATGATAACCCTCCTACACTGATTGGAgaatcttgtgtattcagtgtgaaagaaaatatagatcATGGTGAAATTTGGAGAATCAAGGTTGAGGATTTAGATCAAAAATATTCTGACAACTGGCtggcagtttttaaaattaaatcaggaAATGAAGCAGGGTACTTTACTATAACAACTGACCCTAAGACCAATGAAGGAGTTGTCATGCTCAATAAGGCTATAGATTATGAAGAAATCTCAAGCTTTGAGCTTACAGTTGAAGTCACAAACAAAGCAGTCTTTTACACTTcagtttctgaaacaaaacataataaaattataGTAAATGTAAAGAACGTCCTAGAAGGTCCCAAATTTCACAGAAAGATATATGCTATCCCAGTTTCTGAGGACAGAAGAAAATTCACAAGTCACACTGTGATTGGGACATATCAAGCCATATCTGAGGATAATAGAATGATAATAAAGAATGCCAGCTATTTTAAGAGAAATGATCCCGAAAATTGGCTAATAATCGATGAACACACTGCAGAAATCAGACTTAACAAAATTCCAGATCGGGAGTCAAAGTTCATCATTAATGGAAAATACAATaattcatgtatttttacagaTTTTGCTTCAGAAACAGCCACTGGCACCATTACTCTGGAGGTTGAAGATTTCAATGATCACTGTCCTCGTCTTACAAGTACCATCCAGTCTCTGTGTACAGAGGATCAAGTTGTGTATGTCACAGCGGAGGATGAAGATGCAGATCCTAATGCGGCCCCATTTACATTCTCAATTGTACCTGAAGGTACAAAGTGCAAATGGATGGTTGAAAGTCTGAATGGAACAACTGCAATCCTGAGGTCAAAGACTAGACTGTGGCCTGGTTCATATCAAGTAACAATAAATGTACAGGACCAACAGGGGCTTGCTTGTCCTGACCATCAGGGTATTCTAAAAACGAATGATGTTCTGGATTCAGGGAATGTCATCCTTAAGGAGAAGAGAATGGTGTATGGACCTGTTGCATCAGGTAGTGTGAGCGGTGTACATCATGGTGCTTTGAACGTGGATCCCATATCTGGCTCTCAGAGAGTAGTAGTAGTGGAAAGGAAGGTAGAGGTTGGACAGGTTTTGCAAGCGGGAATGTTCACCGGCTGGATTGTATTGAAGCAGCACTATTTTGAAGAAGACTCACCTGCCATGGCCCGGGTTTCTCTCCCAGGCTTGGTCGCACTGCTGCTGGTCGTGATCACGGTTTTCAAAAATGGAATTGAAGCTGGTCAACTAAGGAGGCAAAAAAGAGAATGGATTATTCCTCCGATAAAAATCATGGAAAATGAGGACTATACAAAGAAGGCATATATTGCCAAGATTCGTTCTGACAAAGAGATCTATGGTTCTGTGGTGTATTCATTGACGGGAGTGGGTGCTGATAGAGAACCTATCAACTTATTCATCGTGGATCCAATTGAAGGGACAATCAAAATCACAGATAAAGTGGATCGAGAGAAAATTGATAGTtactatctCAGAGGAAttgcaagaaacaaaaataactggGAGCTGGTGGAGAACGAAATTGATCTACGTTTTTTTATTGAAGATCAAAACGACAATACCCCAGTGTTTCAAGAGTTTCAAACTGGAGAAGTTGATGAACAAAGCCCAGCAGGCACATCTGTCATGCAAGTAATTGCTACAGATTTGGATCAGCCTAATACTACACATTCAAAAATTGCATATCGAATTGTGGACCAGTCACCATCGGATAAGATGATGTTCTATATCGATCGATATACTGGCGTTATCTATGTTCAGGAGTCTACCCTCGACAGAGAAACGCATGACACCTATAGTTTGACTGTTCAAGGTCAAGATCTAGGCGGTGAACCCAATGGCCGCATTGGATATGGAAAAGTTGCAGTTAAAGTCAGAGATATCAATGATAATCCACCTACACTGGAGAAAGATCagTATGATGGCACCATCGAGGAAAATACAAGAGATGTTGAAGTAATGAGATTCAAGGCCTCTGATCTGGACCAGGTGGGCACTGACAACTGGAATGCTGAATATGAGATTGTGTCAGGAAATGAAGGACAATACTTCAGTATCACAACTGATAAGAAGACAAACGAAGGCATCTTAGTGCTGAAGAAGGAAGTAGATTATGAACAACTGAAGAACTTGGACCTGGACGTGGTTGTCCGAAATGTAGCACCATATGTGGGTGTAGGAGGTAGTAGTGGAGCTTCAGTTGGATTTGGAGGCGAAGGTGGcggaggaggtggaggtggatTTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGATCTGGTAGTTCAACTGCATACAGTGGATTTTCAAAGACCTATCCAgttaaaatcacagtaaaaaaCCAGCCTGAAGGACCAAGGTTTGACCCGAAGGTAAAAGCTGTTGCAGTATCTGAGGAAAAGGCAAAAACGAACATCAACAGTGTGATTGTAAAATATCCAGCCTTGAATGGGGATACTTTAAAGCCTGCTGAGCATGTCAGatATGCCAAAGGATATGATCCCGACTACTGGCTGACAATTGATGAACGTACTGCAGAAATCAAGCTTAACAAGTTGCCAGACCGGGAATCCAAGCACTTGGTTAATGGAACATACTACGCAAAAATTCTGTGCATGACTGAAGATTTACCTTCAAAAACAGCCACTGGTACCATTGCCATTCAGGTTGAAGACTTCAATGATCACTGTCCTCATCTTACAAGTACTTCACAGATTTTATGTACAGATGACCACGTTGTGTATGTCACTGCTGAGGATGGAGACATTGATCCCAATGGAGCCCCGTTTTCATTCACAATTATACCTGAAGATACAAAGGGAAAATGGACAGTTGAACCTCTGAATGATACATCTGTAATCCTAAGGAATGCGGAGAAGATGTGGCCTGGTTTATATACAATCGGTCTTGAAGTTAAAGACCAACAAGGGTTGTCCTGTCCTGACAAACAGGTTTTACAAGTTGATGTTTGTACCTGCAATAAAGATAAATCCTGTGGAGAGTCAAGAAAAACATCTGGTGCTGTATTTGGACCTGCAGGCATTGGGCTCCTTATCCTTGGGTGTCTAATGTTATTACTTTTACCTCTTCTACTGCTGTTTTGCAAGTGTGGTGGCCCTGGTGCAGCTGGTTATGGGGGGTTTAAAGAAATGCCTTTTGATACCAAAGAGCATTTGATCGCATATTCCACAGAAGGACAAGGTGATGACAAGGCAGTTCCAACTCTGATTCCACCCATGGAAATGGATTCTGGAGGAATTGATTCAGGgatgaaacaaatgaatatgAATTCTCTTGGATCTGGTTATAATAACCAGCCTGGGTACAAGTACCCAGATCAGAGCTCAAGCCATAGGTACAATGGTGGTACATTTATAAGTCAGGAAAACGGAAGCACTTTACGTTCAAGGTTTGAACTACATGATGATTCTTATGATGGGATTGCACTACCTGAAGCTTATTTGGAAAATTACTACATGGAGaaggCGAAGCATGCTGCAGTGGAAGGCCAAACTCAGAAAGATGCGTTGCTTATTTATGACTTCGAAGGGCGTGAATCCCCTGTTGGATCAGTGGGGTGCTGCAGTTTCATTGAAGGTGACCAGGACTTGGAATTCCTGAATGATCTAGGACCCAAGTTTAAAACTCTTGCAGAGATCTGCACAGGCAAAGAAGAAAAGATCGAAGTTATCagaccaccatcaccaccacaaCCTACCCAGCCAGTTGCTATGTCGACTCACACAATGaccaataaagaaaatgtgatcaatacaaatattatgcCCACCCCAGCTCCACAACCCCAACCTATTCAACAAAGCAGTACAGTATTTTCTTCCTCTACTCTCCCAACTATGCACGTTAGAGAAAATGTTGTTGTTCCCAATTCAGCATACGTCATTCAACAACCTGTGTACTATGCTGCCACACCAGTTATACAAACCACTCGATACGTAGTTGACCCTCATGTCCACAACACCATGCTAGTCTCAGAAAGATCTTCTGCTCCCAATATCCATGGCATGGTGCTGGTAAATGATGTTCCCAGTTCAGAGAATATAATCATAAAAGAGAAGGGAATGATGTCCGGACCTTCAATGCAAGGTGGGATGATCAATGTACAGCATGGTACCTTGAACATGGGAGAAAGACCTGGTGCTCAGAATGTAGTGTTAGTGGAGAGGAAAGTGGGAAATGGCCAGTTTGTGCAAGAAGGAATGGCAGGGTTAAATCAAGGGGTTGTTCACTTTGGTGATCTGTCTGGATCGCAGGATGTGGTGTATAGAGAGAAAATTGTGTCATCTAGCTCAGGCTCACATGGTGGAATGAGGGGGCTCGATGGAGGCCTTTATCACATGGGTAATCTGCCTGGCGCACAGAATGTGGTGTTAATGGAGAGAAAAGTGGGGACTGGGCAGGGTGTGCAAGAAGGAATGGCAGGGCTCAATCAAGGTGTTGTACAAATGAGTTCCCTGTCTGGATCGCAGAATTTTGTGTCAAGAGAAAACACTCGGTTAACCAGCTCGGGTTCACAGGGTGGGATGATGGGTCTGGACAGGGGCACCTCTGCTTTGGGTAATATGACTAGCTCGTCTAAGGTAGTCGTGGAAGAGGTCACTAGTCGCCATGTGTAAGGTAGCATCACTGGAAAAGGGCATTGTGCCTGTTGATTGTAATTAATGGAAGATAAGCAGGATACTGTACATTTGGGTTTATTTTCTCAACCATTGTGCCTCCTCTACTGGTGTTTGTCTTAATGGAGCTGGCTTTGAAGTTAGGAGAGGGGTTTGCAGGAATATTTTTTGGATTAATTTTAATCTTTATGTTAAATCAATTGCTCTCCATTATATTTAGAGTACCTTACTCAAGTAGTTAACTACTAATTTATCTGTCGATCTCAGACTGAccgataataataatttctataTGTCCGTCATGTTTAAgggttattttgtattatatgtaaAATTACAATCTATGTAAAGCTAAAtatgaacttaaaaaaatgtatcaaaaattTCAAATGTAAGTGTAAGAAGTGCCTTTTTCAAATGGCACTAGATTTTAGATGTTTAAGTAGTTAACATCTTTGGTTTATATTGCATGAAGATAAGAGTTGTTATCATATATGATTTTTTCACTAAGTgtttaagtgttatttttttttaccaatgaTTATTAAAAGCAAGACTGTTTATTAGATGATGATCAATGGCTGTGCGTTTCAGTCATGCCAAATACCATTGCTTGAAGTGAAAAGGCGGAATTGCAACAGTGTTGTATAGACGAGTCTGTACTTTTTTGTCCAGATGGActtgctgtattgtttttattccatgttttctAAGATAATTATTGTGAACATAGGTGCTGTTCAAAGCACGTCAGACTTGCATGTCCCCTTGGAAACATGGTTGCCTTTAAATGTCATGTAAAGCACAGCATTTTGCATAACTGAAACACACATGAAACTGCAGCCAATGTAAATAGTATTGGGTGTTTCCAATGTTGAAAacgtttatatttatatagatgtatatctatcgatagatatagatatataatcgATATCGATATATTACCATATATAACTTCTAACTCTGAATTAAAGTGTATGTGGGAATTGAAATTACtgtaaaagtttgttttatggtatatgaaaatcttttttttttactaataaGCATgacaaagcatttttaattacagttttcatAGCAAGGGGCCTACTAGAAGCAGTATGTGTGCCattgtaattttttgttttgcttaagaCCACTGTGCTCATCAGATCTCTCATTATAGAAGTACCATGTCTGGAAACAATTCAGCAaacaaattacatgtattttcccCCAAACATCTCAATAAAACGCAT

Function

GO: NA

KEGG:

id description
K07597 DSG2; desmoglein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019322 True 6515 mRNA 0.40 24 14672973 14698199

Neighbor

gene id symbol gene type direction distance location
AMCG00019316 NA coding upstream 998221 13670253 ~ 13674752 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding upstream 1006396 13662222 ~ 13666577 (+)
AMCG00019306 NA coding upstream 1362151 13292718 ~ 13310822 (+)
AMCG00019309 NA coding upstream 1436147 13214956 ~ 13236826 (+)
AMCG00019308 NA coding upstream 1510911 13153820 ~ 13162062 (+)
AMCG00019321 NA coding downstream 16606 14714805 ~ 14720892 (+)
AMCG00019325 NA coding downstream 198626 14896825 ~ 14901846 (+)
AMCG00019331 NA coding downstream 205143 14903342 ~ 14907478 (+)
AMCG00019324 NA coding downstream 215826 14914025 ~ 14927971 (+)
AMCG00019323 NA coding downstream 240741 14938940 ~ 14945227 (+)
G33161 NA non-coding upstream 180767 14491892 ~ 14492206 (+)
G33153 NA non-coding upstream 386957 14285565 ~ 14286016 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding upstream 512270 14152802 ~ 14160703 (+)
G33093 NA non-coding upstream 1034802 13633702 ~ 13638171 (+)
G33075 LOC104962440 non-coding upstream 1361231 13311414 ~ 13311742 (+)
G33307 NA non-coding downstream 785879 15484078 ~ 15533196 (+)
G33392 NA non-coding downstream 1230370 15928569 ~ 15931201 (+)
G33404 NA non-coding downstream 1304597 16002796 ~ 16003201 (+)
G33408 NA non-coding downstream 1402759 16100958 ~ 16101159 (+)
G33422 NA non-coding downstream 1667915 16366114 ~ 16366342 (+)
G33159 LOC103376870 other upstream 186267 14439253 ~ 14486706 (+)
G32539 NA other upstream 4263476 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 5044311 9369898 ~ 9628662 (+)
G32286 NA other upstream 5133762 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 5324154 9329479 ~ 9348819 (+)
G33283 NA other downstream 466149 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 856620 15554819 ~ 15626955 (+)
G33406 NA other downstream 1345743 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 2751121 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 4306825 19005024 ~ 19021412 (+)

Expression


Co-expression Network